Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00690 ATGGGTGAAAATTATCCCTTTTCTTCTACCTACTTGATACTACTACTAATAACCATAGCTACCCTGTTACCACCAGAGCATGCCATTGTTGATAATATATCCCACAAGCTCCATAACGACCCTGAAACCATCCAATTGGCTTCTATGGACTATGGAAACATTGTACAAGAATTCCCAGCTGCTGTGTTTCGTCCATCTTCTATAAATGACATAGCAAGCTTGATTAAAACCTCATACAATAGCTCTGTTCCTTTCAATATAGCTGCTAGGGGACAAGGTCACTCCACTCGTGGACAGGCCATGGCTCGTGATGGGGTTGTGATTGACATGTCTAGCTTCAGGAAACAAAGAAATGGGGTTGCTATAAGTGTCTCTGAGGACCCTTTGATGGGGTATTATGTTGATGTTGGAGGGGAACAACTTTGGATTGATGTGTTAGATGCGACACTTGAACATGGACTTGCACCTGTTTCTTGGACAGATTATCTTTACTTGACAGTGGGAGGAACTCTTTCCAACGGTGGGATTAGTGGTCAAGCATTCCGATATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTCATCACTGGCAAAGGAGATTTGGTAACCTGCTCTTCTCAGAAGAATTCAGAGTTATTTCATGCTGTTCTTGGAGGTTTAGGACAATTTGGAGTGATAGCAAGGGCCAGAATTGCTCTTGATCCAGCACCCAAAAGGGTTAAATGGGTGAGATTGCTTTATCATGACTTTTCTGCTTTTACCAAAGACCAGGAGCGATTAATCTCAATGAATGGAAGGAAAGAAAAAAGTGCATTGGATTTTGTGGAAGGGATGCTGCTAATGCACCAAGGCTCCATAAATAATTGGAGATCCTCTAATTTCTTCCCTTTGTCTGACCATTCCAAAATAGCTTCTTTAATGACTAAATATAGCATCCTCTACTGTCTTGAATTCGTTAAATATTATGATCACCAATCCGAGAAAAACGTGGACAAGGAAATTCAAGATTTGCTCCAAGGACTAGCCTATATCCCTGGATTTCATTATGAGAAAAATGTTACATATGTTGAGTTCTTGAATAGAGTCCGAAGTGGAGAGTTGAAGCTTCAATCACAAGGACTGTGGGATGTTCCTCACCCATGGCTTAATCTGTTTATACCAAAATCTCAAATCTTGGAATTTAATTCAGGCGTATTCAAGGATATAATTCTTAAAAGAAACATCACCGCTGGATCACTTGTCTTGGTTTACCCCATGAATAGAAGCAAGTGGGACGATAGGATGTCAGCAACTATACCAGATGAGGATGTCTTCTACACAGTTGGGTTTTTACACTCAAGTGGATTTGATAATTGGAAGGCATATGATGCTCAAAACAGAGAAATTATGAAGTTCTGTAGTGACACTGGCATTAAGGTTAAGCAATATCTTCCAGATCACAGCACACAGGAAGATTGGAAAATCCACTTTGGCACTAAATGGAGGATTTTCAAAGAAAGAAAACATGAGTTTGATCCAAGAATGATCCTATCACCAGGACAAAAAATCTTCCACAACAATTATAACCAGCCTTTTAAATATTTTCCCCAATGA 1596 0.3991 MGENYPFSSTYLILLLITIATLLPPEHAIVDNISHKLHNDPETIQLASMDYGNIVQEFPAAVFRPSSINDIASLIKTSYNSSVPFNIAARGQGHSTRGQAMARDGVVIDMSSFRKQRNGVAISVSEDPLMGYYVDVGGEQLWIDVLDATLEHGLAPVSWTDYLYLTVGGTLSNGGISGQAFRYGPQISNVHEMDVITGKGDLVTCSSQKNSELFHAVLGGLGQFGVIARARIALDPAPKRVKWVRLLYHDFSAFTKDQERLISMNGRKEKSALDFVEGMLLMHQGSINNWRSSNFFPLSDHSKIASLMTKYSILYCLEFVKYYDHQSEKNVDKEIQDLLQGLAYIPGFHYEKNVTYVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQILEFNSGVFKDIILKRNITAGSLVLVYPMNRSKWDDRMSATIPDEDVFYTVGFLHSSGFDNWKAYDAQNREIMKFCSDTGIKVKQYLPDHSTQEDWKIHFGTKWRIFKERKHEFDPRMILSPGQKIFHNNYNQPFKYFPQ. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00690 531 Gene3D - 240 477 IPR016170 -
Seca12g00690 531 SUPERFAMILY FAD-linked oxidases, C-terminal domain 238 518 IPR016164 GO:0003824|GO:0050660
Seca12g00690 531 Pfam FAD binding domain 59 206 IPR006094 GO:0050660
Seca12g00690 531 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 59 94 IPR006093 GO:0016491
Seca12g00690 531 FunFam Cytokinin dehydrogenase 2 240 477 - -
Seca12g00690 531 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 238 518 IPR015345 GO:0009690|GO:0019139|GO:0050660
Seca12g00690 531 PANTHER GULONOLACTONE OXIDASE 21 518 - -
Seca12g00690 531 ProSiteProfiles PCMH-type FAD-binding domain profile. 55 237 IPR016166 GO:0071949
Seca12g00690 531 Gene3D - 40 518 IPR016167 -
Seca12g00690 531 SUPERFAMILY FAD-binding/transporter-associated domain-like 35 236 IPR036318 GO:0050660
Seca12g00690 531 Gene3D - 110 239 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00690 Seca-Chr12 6280266 6284760 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00690 K00279 - gmx:100787676 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00690 12 6280266 6284760 Seca12g00690 12 6280266 6284760 ECH
Seca12g00690 12 6280266 6284760 Seca6g03769 6 105022604 105028605 PCT