Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03763 GTTTGCACTGATTTTAAGTTAATAGCGTTTTACATTTTTTATATACATGAAGGTAGAAGGCGCTCTAAATCAGATGCAGATGACTCAAGTGAGGAGAACATGTCTAAGAAAGATTTAGCCCTACAACAAGCACTGGATCAGATCACTTCTGCATTTGGAAAGGGATCTATCATGTGGCTAGGTCGTTCTGTCTCACCCAAAAATGTACCTGTGGTGTCAACTGGTTCTTTTGCTCTTGATATAGCACTAGGAATCGGTGGTCTTCCCAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTTATTTCAGAGGCACAGAAGCTAGGAGGCTATTGTGCCTTTGTGGATGCTGAGCATGCACTTGATAAGGCACTTGCAGAGTCTATCGGGGTAAATACTGAGAACTTGCTTCTTTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCCAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGGTTAATGAGCCAGGCACTTCGGAAATTGTGCCACTCCTTGTCACTTTCACAGTGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGAGGGCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATTCTTCTGTGCGGCTAAATATCAAAAGAGTAGGGTTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGCCAGGTTCATGTGAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTCAGTTTGGCAAGGGTATATGTAGAGAAGCAGAGATTATAGAGTTGAGCCTAAAATACAAACTCATAAAAAAGAGTGGTTCATTTTATGAGTATAATGGCCGGAATTTCCATGGTAAGGATGCTCTAAAGAGGTTCCTCACCGAGGGTGATAGTGTACTTGAATTAACAACAAAGCTCAGGGAGAAGCTTCTTAATGATGAGACAGAAATGGTGCCAGAGGCGCAGGTGATGATTGGAGATGTTACCGAAGAAATGGTATTACCTGATTCTACCGATGAAGAAGCAGCAGCTGCTGTACAAGCATGA 1197 0.4269 VCTDFKLIAFYIFYIHEGRRRSKSDADDSSEENMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKALAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEETLGSQVHVKVVKNKHAPPFKTAQFELQFGKGICREAEIIELSLKYKLIKKSGSFYEYNGRNFHGKDALKRFLTEGDSVLELTTKLREKLLNDETEMVPEAQVMIGDVTEEMVLPDSTDEEAAAAVQA. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03763 398 PANTHER RECA 18 368 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 Gene3D - 67 364 IPR027417 -
Seca6g03763 398 PRINTS RecA protein signature 246 274 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 PRINTS RecA protein signature 160 189 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 PRINTS RecA protein signature 198 227 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 PRINTS RecA protein signature 332 349 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 PRINTS RecA protein signature 279 308 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 PRINTS RecA protein signature 126 155 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 303 IPR027417 -
Seca6g03763 398 SUPERFAMILY RecA protein, C-terminal domain 305 355 IPR023400 -
Seca6g03763 398 Hamap Protein RecA [recA]. 37 364 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 ProSitePatterns recA signature. 249 257 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Seca6g03763 398 ProSiteProfiles RecA family profile 1. 68 227 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Seca6g03763 398 ProSiteProfiles RecA family profile 2. 237 308 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Seca6g03763 398 CDD RecA 68 305 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 FunFam Recombinase RecA 66 364 - -
Seca6g03763 398 SMART AAA_5 90 264 IPR003593 GO:0016887
Seca6g03763 398 NCBIfam recombinase RecA 37 353 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca6g03763 398 Pfam recA bacterial DNA recombination protein 40 303 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03763 Seca-Chr6 104940019 104944763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03763 K03553 - gmx:100798983 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03763 6 104940019 104944763 Seca6g03763 6 104940019 104944763 ECH
Seca12g00685 12 6207806 6216916 Seca6g03763 6 104940019 104944763 PCT