Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00685 ATGGTCATTTCATGGGCCATGATCATGGATAAAGGCTTTAAACTAGGGGTATCAGGCACTTCTCAGATTTTAAGCTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCTGGTGAAGAGAACATGTCTAAGAAAGAGTTGGCCCTTCAACAAGCTCTTGATCAGATCACTTCCGCATTTGGAAAGGGATCTATCATGTGGCTTGGGCGTTCTGTCTCACCAAAAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATATAGCGCTAGGAGTTGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATATGGCCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCGGAGGCTCAAAAGCAAGGAGGCTATTGCGTCTTTGTTGATGCTGAGCATGCCCTTGATAAGACACTTGCAGAGTCTATTGGTGTGAATACCGAAAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGACGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCGCTTCGAAAATTGAGCCACTCCTTGTCACTTTCTCAAAGTATATTGATTTTTATAAACCAGGTGAGGTCAAAACTTTCTACTTTTGGGGGATTTGGTGGGCCCGTTGAGGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGCGGCTAAATATCAAAAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTGTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTCGGCAAGGGTATATGTAGAGAAGCAGAGATTATAAAGTTGAGCATACAACACAAACTCATCTCGAAGGCTGGTTCAATGTATTACTATAAAGAGCAGAGTTTTCGTGGCGTGGATGCTCTCAAGAGTTTCTTAGCTGAGAATTATAGTGCAAAAGAAGAACTTGAAATGAAGCTCAGGGAGAAGGTTTTCAGTGCTGAGACAGAAAAGGTGCCAGAGGCAGATGTGTTTAGTGGGGATGTATCGGAAGAAATAGCAACCCTTGATTCTACTGACGAAGAAGCTGCAGTTGTTGTAGAAGCATGA 1236 0.4312 MVISWAMIMDKGFKLGVSGTSQILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSILIFINQVRSKLSTFGGFGGPVEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVVVKVVKNKLAPPFKTAEFELQFGKGICREAEIIKLSIQHKLISKAGSMYYYKEQSFRGVDALKSFLAENYSAKEELEMKLREKVFSAETEKVPEADVFSGDVSEEIATLDSTDEEAAVVVEA. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00685 411 ProSiteProfiles RecA family profile 2. 249 320 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Seca12g00685 411 Pfam recA bacterial DNA recombination protein 52 315 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 SUPERFAMILY RecA protein, C-terminal domain 317 372 IPR023400 -
Seca12g00685 411 MobiDBLite consensus disorder prediction 26 48 - -
Seca12g00685 411 MobiDBLite consensus disorder prediction 30 47 - -
Seca12g00685 411 ProSitePatterns recA signature. 261 269 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Seca12g00685 411 FunFam Recombinase RecA 78 377 - -
Seca12g00685 411 Gene3D - 79 382 IPR027417 -
Seca12g00685 411 CDD RecA 80 317 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 PRINTS RecA protein signature 291 320 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 PRINTS RecA protein signature 138 167 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 PRINTS RecA protein signature 210 239 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 PRINTS RecA protein signature 344 361 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 PRINTS RecA protein signature 258 286 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 PRINTS RecA protein signature 172 201 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 NCBIfam recombinase RecA 49 371 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 Hamap Protein RecA [recA]. 49 376 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 ProSiteProfiles RecA family profile 1. 80 239 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Seca12g00685 411 PANTHER RECA 25 380 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca12g00685 411 SMART AAA_5 102 276 IPR003593 GO:0016887
Seca12g00685 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 315 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00685 Seca-Chr12 6207806 6216916 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00685 K03553 - gmx:100781271 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00685 12 6207806 6216916 Seca12g00685 12 6207806 6216916 ECH
Seca12g00685 12 6207806 6216916 Seca6g03763 6 104940019 104944763 PCT