Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03737 ATGATGTTGTCGAGAATGGAAGCTGGTAAGAAGGGTGGTGGGGTTTCTAGTAACAAAACGAAGTTGTTAAAGGATGTTGAAACTATAAATAAAGCTATGTACTTGGACAGAAACTCTTCAAGGAATTCAATATCTGGTGCAAGTTCTCGATCTAAATCCACTGGGAAATCCCTGTTACCTGATCCCAAATCAAGGCCTAAAGCCAGTAATAATAATGATGTTGATAATTTGCAGAAGGATAAGAAGTCCATATGGAATTGGAGGCCACTGAAGGCCCTTTCTCACATCCGCAATAAGAGGTTCAATTGTAGTTTTTATCTCCATGTCCATTTGATTGAAGGGTTGCCTTCCAATTTTGAGGACTCTAGCCTTTCTGTGTACTGGAAGAGGAGGGATGGGGTTCTGGTGACCCGTCCGGCCAAGGTGAGTCAATGTGTGGCTGAATTTGAAGAGAAGTTGACTTACACTTGCTCAGTCTATGGCAGTAGGAATGGACCTCACCATTCTGCAAAGTATGAAGCAAAGCATTTTTTGCTCTATGCTTCTCTCATCAATGCACCAGAACTTGATTTGGGGAAGCATCGGGTTGATCTCACGAGGTTGCTTCCTCTCACTCTGGAGGAGCTTGAGGAGGAGAAGAGCTCAGGGAAGTGGACTACTAGTTTTAGATTATCAGGAATGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGGTATATGGTGGTTGGTGATGGTACTAGTGCTACCAGAGACAGCCATAATGCTCCTAATATAGTTACAACTTCAAGGCAAAACAGTCTTGCTTTGATGATGAAATCAGATGTTAAACCCAAACAGCTAGATGGAAGCAGCAGCATGAGGCGTGCTGGAAGTTTGCAAAACTTTACCAGTCAGTATTCATCTCGAGCTGCAGATGAGGTAAAGGATCTTCATGAGGTACTGCCATCATCTAAGTCAGCACTAGCCAGCTCAATAGACATCTTATATAAGAAGTTTGATGAAGAAAAGGAATGTAGTCCTCCATATAATGAGCCTGAACTTGATTCGTTCATAGAAAATGTTGAGCCTATCAAACCGGATGCCTTTGCTTCATCTGATCTTGGAAAAGAAAAGCCTGAAGAGCATGCAGGTGATGATGGAAATACATGTCCAGTGCAAGACAAACCTGAACTTGATGCATTTCAAAAAAACCTGGAGACAGTTAAACCAGATGGCTGTCATTTACCTGATTCTAGAAAAGAAAACCATCAAGAGTGTCAAGATAATGAGTTTTTTGTTGTTGATAAGGGCATAGAATTGTCACCAAATGAGCCTGTTAAACAAGTGGAATCCATCATAAAAGCTCCTGAGGATGCTTCTACCCTTGATAGTATGTGTACTCATGATACTACAGGTATACAAGTATCTTCTGAAGATAATATTAAAAGTGATTCCCTGGATGAGACAAATGATAGTTCTAAGGATCAGGCAGTGGTAGATGAATTTGCTTGCAAAGAGGATGGCTTAGACACAAATGAACTACTGCAAGAATTAGAATCGGCTTTAAATAGTGTCTCAGAATTGGAGGCAGTGGCACTAGAATCTCCTAAAATTATGGAAGCCAAATCTGAAAGTAAAATGAGAAAGTCACATAGCTTGGATGACGTTACAGAATCAGTTGCCAGTGAATTTTTAAACATGCTAGGCATAGACGATAGTCCAATGGGCCTGAGTTCTGAAAGTGAGCCTGAGTCTCCAAGAGAGCTTCTTTTAAGACAATTTGAGAAGGAGGCTCTGGATGGGGGATTCTCTTTATTTGATTTTGACGTGGAGTATGATAATGAAGCAGATGGTGGCTATGATGTTTCTACTGGATCTGAGCAGTGGAACTTCTCTGAGGGCATTCAGTCATCATCGTTGCTGCAAGATCTGCAGAAGGAGCATCTAGTTGAGTCTCAAGATGTGAAGAACAAACAGAGGGCTCAGATGCTAGAAGACTTGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGAAGGATTTTCATCATTCTCCACCAAAGGATTATGCTGGTTTTGGAAGTCCAATTCATTTGCCACCTGAAGAGCCCCCCACATTGCCTCCTCTTGCTGAGGGGTTGGGCCCTTTTCTCCAGACAAAAGATGGGGGTTTTCTACGGTCTATGAATCCCTCACTTTTTAGTAGTGCTAAAAGTGGTGGTAGCTTAATCATGCAGGTTTCCAACCCGGTTGTGGTACCTGCAGAAATGGGTTCTGGGATAATGGACGTTTTACAGTGTTTGGCTTCAGTGGGAATTGAAAAGCTCTCAATGCAGGCAAAGGAGTTAATGCCTTTGGAAGATATCACAGGGAAGACAATGCAGCAAATAGCATGGGAAGCTATGCCTGTCTTAGAGGGAACAGAGAGCCAATGTCATTTGCAGCATGAGTCAATAACAGGGCAGGATTCTACTTGTGTGCAAATGGACTTCAAGGGAACACCATCTGCACTAAAGCCTAGCAAGTTAAGTTCAAGTTCAATGGCCAATCAGACAAGCTCAGAATTTGTTTCATTAGAAGACCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATACAATCTGGGATGTCAGAGGAGGATGCACCGTCAAACATCGTTGCACAATCCATTGGAGATATGTCAGCTCTCCAGGGCAAGGGAATTGATACTAGTGGGTCCCTTGGCCTGGAAGGAGCTGCTGGTTTGCAGTTGCTGGATGTAAAAGAAAGCAGTGACAGTGTTGATGGAATAATGAGCCTATCATTAACTCTTGATGAATGGATGAGGTTAGATTCTGGTGAGATTGATGATGTAGACAATATCAGTGAGCATACCTCCAAACTTCTTGCAGCCCATCATGCTAATTCCTTTGACTTTATGCGCGGGATTTCAAAGGGAGAGAAGAGACGAGGCAAAGGCAGAAAATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAACTTCGTGATCCTCTAAGAAATTATGAGCCTGTTGGAACACCAATGCTTGCTCTTATACAAGTGGAGAGAGTGTTTGTCCCACCAAAGCAAAAAATTTACTGTGGTGTGTCTGAGGTAAGGAACAACAATGATGAGGATGATGAGAGTGAAATAGTAGCTAAGGTGGAGATAAAGGAGACCAAGAAAGAGGAGAAAAGTCCCGAAGAGGAGGGCATTCCTCAGTTCAAAATTACTGAAGTCCATGTGGCAGGTCTCAAGACAGAGCCTCAAAAAAAGAAGCTTTGGGGCACTTCAAGCCAGCAACAATCTGGTTCTCGATGGTTGCTTGCTAATGGAATGGGGAAGAACAAGAAACCTTCATTAATGAAGTCAAAGGCTGCATCTAAATCTAGTGCTCCGGTTACCACAAAGGTGCAGCCTGGTGACACCTTGTGGAGCATTTCTTCACGTATTTATGGTACTGGAGCAAAATGGAAGGATTTGGCAGCACTAAATCCACATATAAGAAACCCCAATGTCATTATACCAAATGACACTATAAGACTTAGTTGA 3567 0.4244 MMLSRMEAGKKGGGVSSNKTKLLKDVETINKAMYLDRNSSRNSISGASSRSKSTGKSLLPDPKSRPKASNNNDVDNLQKDKKSIWNWRPLKALSHIRNKRFNCSFYLHVHLIEGLPSNFEDSSLSVYWKRRDGVLVTRPAKVSQCVAEFEEKLTYTCSVYGSRNGPHHSAKYEAKHFLLYASLINAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGMAKGAVMNVSFGYMVVGDGTSATRDSHNAPNIVTTSRQNSLALMMKSDVKPKQLDGSSSMRRAGSLQNFTSQYSSRAADEVKDLHEVLPSSKSALASSIDILYKKFDEEKECSPPYNEPELDSFIENVEPIKPDAFASSDLGKEKPEEHAGDDGNTCPVQDKPELDAFQKNLETVKPDGCHLPDSRKENHQECQDNEFFVVDKGIELSPNEPVKQVESIIKAPEDASTLDSMCTHDTTGIQVSSEDNIKSDSLDETNDSSKDQAVVDEFACKEDGLDTNELLQELESALNSVSELEAVALESPKIMEAKSESKMRKSHSLDDVTESVASEFLNMLGIDDSPMGLSSESEPESPRELLLRQFEKEALDGGFSLFDFDVEYDNEADGGYDVSTGSEQWNFSEGIQSSSLLQDLQKEHLVESQDVKNKQRAQMLEDLETEALMREWGLNEKDFHHSPPKDYAGFGSPIHLPPEEPPTLPPLAEGLGPFLQTKDGGFLRSMNPSLFSSAKSGGSLIMQVSNPVVVPAEMGSGIMDVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQIAWEAMPVLEGTESQCHLQHESITGQDSTCVQMDFKGTPSALKPSKLSSSSMANQTSSEFVSLEDLAPLAMDKIEALSMEGLRIQSGMSEEDAPSNIVAQSIGDMSALQGKGIDTSGSLGLEGAAGLQLLDVKESSDSVDGIMSLSLTLDEWMRLDSGEIDDVDNISEHTSKLLAAHHANSFDFMRGISKGEKRRGKGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVERVFVPPKQKIYCGVSEVRNNNDEDDESEIVAKVEIKETKKEEKSPEEEGIPQFKITEVHVAGLKTEPQKKKLWGTSSQQQSGSRWLLANGMGKNKKPSLMKSKAASKSSAPVTTKVQPGDTLWSISSRIYGTGAKWKDLAALNPHIRNPNVIIPNDTIRLS. 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03737 1188 MobiDBLite consensus disorder prediction 364 381 - -
Seca6g03737 1188 Gene3D LysM domain 1129 1188 IPR036779 -
Seca6g03737 1188 Pfam LysM domain 1142 1187 IPR018392 -
Seca6g03737 1188 SUPERFAMILY LysM domain 1139 1187 IPR036779 -
Seca6g03737 1188 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1182 IPR039614 -
Seca6g03737 1188 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g03737 1188 MobiDBLite consensus disorder prediction 37 73 - -
Seca6g03737 1188 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 98 239 IPR019448 -
Seca6g03737 1188 SMART LysM_2 1140 1188 IPR018392 -
Seca6g03737 1188 MobiDBLite consensus disorder prediction 1128 1144 - -
Seca6g03737 1188 ProSiteProfiles LysM domain profile. 1139 1187 IPR018392 -
Seca6g03737 1188 ProSiteProfiles C2 NT-type domain profile. 93 241 IPR019448 -
Seca6g03737 1188 MobiDBLite consensus disorder prediction 37 76 - -
Seca6g03737 1188 Coils Coil 504 524 - -
Seca6g03737 1188 CDD LysM 1142 1187 IPR018392 -
Seca6g03737 1188 MobiDBLite consensus disorder prediction 1115 1144 - -
Seca6g03737 1188 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03737 Seca-Chr6 104669989 104673653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03737 - - mtr:25486459 1703.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03737 6 104669989 104673653 Seca6g03737 6 104669989 104673653 ECH
Seca12g00662 12 5961642 5965639 Seca6g03737 6 104669989 104673653 PCT