Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00662 ATGCATTCTTCATATTTTAATTTCAATCCTTTCAAAAAGACGATGTTGTCGAAAGCTGAAGGTGATAAAAGTAGTAGTGAAGATCAGAATAAGTTGTTCTTAAAAGATGTTGAAACCATAACCAAAACTCTGTATCATCAAAAAAGCTCTTCCAGAAATTCAACATCATCCAAATCAAAACCTAATAAAGAAGATAATTTGCGCAAGGATAAGAAGTCCATATGGAATTGGAAGCCATTGAAGGCCCTTTCCCTAACCCGGAACAAGAGGTTTAAGTGTAGTTTTTCTCTCCAAGTCCATTTGATTGAAGGGTTACCTTTAGCTTTCAATGATTCTAGCCTTTGTGTGCACTGGAAGAGGCGAGATGAACATATGGTGACCCCTCCAGCCAAGGTGGTTCAAGGTGAGGCTGAGTTTCAAGAGATGTTGACTTACACTTGTTCAATCAATGGAAGTAGGAGTGGACCCCACAATTCTGCGAAATATGAAGCTAAGCATTGTTTCCTCTATGCAACTATGCTTGGTTCACCAGAACTTGATTTAGGGAAGCACCGGATTGATCTCACAAGCTTGCTTCCTCTTACTTTGGAAGATCTTGAAGAGGAGAAGAGCTCAGGGAAGTGGACTACAAGTTTTAGATTATCAGGAAAGGCTAGGGGTGCAGTAATGAATGTCAGTTTTGGGTATGTGGTGGTTGGTGACAACACTGGGGATACCAGAGAGAATCATAGTGATCCTAAATCCACTTTGAGGCAAAATAGTATGGTTTTGATGGAATCAAATATAAAGGTTATTCAGTCTGACAGGAGCATCATGCGTACTGGAAGTTTGCCTAGCTTTACTCAGTATTCACCTCAAAATGTAGATGAGGTTAAGGATCTTCATGAGGTATTGCCATCATCAACATCAGCACTGGCCAGCTCAATAGACAGATATGAGAAATTTGATGAAGAAAAGACATGTAGTCCTCGGCATGACAAGCCTGAACTTGATGTATTTAAAGAAAATATTGAGCAGATTGAACTTGATACTTGTTGTTCATCTGATACTGAAAAAGAAATGCCGGAAGAGCATCAAGGTAATGAAGGAAAAATGTGTAGTCCAGAACCTGACAAGCCTGAATTTTCTGTGTTTCAAGAAAACCTGGAGACAATGAAGCCAGATGGTTATCCTTTACCTGATTTTGGAAAAGAAAATCCTGAAGAGTGTGAAGCTAATGGAATTTCTGGTGTTGCTCAGGGCATTGAATTATCATCATATGAACATGTTGAAGTAGAGGAATCTGTCGTAAAACATATTGTTGATGCTCATACAGTTGACAGTGCACCTACACTTGATGCTGTCAAACAGGACTCCTTGGATGATCTGAATGATAGTTATAAGGAAAGCTCTGTGGTACATGAACTTTCTAATATAAAGGATGACTTATGCACAAAAGAACTGCTCCTGCAAGAACTAGAATCAGCTTTGCATAAGGTCTCAGAGTTGGAGAGAGTGGCACTAGAATCTCCTCAAATTGTGGAAGCCAAATCTGGATATAAGATGAGGAAGTCACATAGCTTGGATGAACTTACAGAATCAGTTGCCAGTGAATTTTTAAGTATGCTAGGCATAGACAATAGTCCAATGGGCTTGAGTTTTGAAAGTGAGCCTGAGTCTCCGAGAGAGCGCCTTTTAAGACAATTTGAGAAGGACACTCTGTCTGAGAGCTTCTCTTTATTTGGTTTTGACAAGGGTAATGATGATAAAGAATATGGTGGCTATGATGCTTCTTTTGGATCTGAGCAGTTGAAGTTCTCTACAGGTATTAAGTCTGAAGATGTGAGGAGCAAACAGAAGGGCCAGATGCTAGAAGACTTGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGAAGGCTTTTCAACATTCTCCACCGAAAGACTTTGCTGGTTTTGGAAGTCCAATTCACCTACAACCTGAAGAACCTCTCATATTACCTCCTCTGGCAGAGGGGTTAGGTCCTTTTCTTCAGACAAAAGATGGGGGGTTTCTACGGTCTATGAATCCCTCACTTTTTAGGAGTACCAAAAGTGGTGGGAAATTAATCATGCAGGTTTCTAACCCTGTTGTGATGCCTGCAGAAATGGGTTCAGGGATAATGGAGATTTTGCAGTATTTGGCTTCAGTTGGTATTGAAAAGCTTTCGAAACAGGCAAACGAGTTAATGCCTCTGGAAGATATCACAGGGAAGACAATGCAACAAGTATCATGGGAAGCTGACTTTAAGGGAACAGACAGGCAATGCTATTTGCAGCAAGATTTGGTAACCGGGCAAGATTCTACTTGTGTACAAAGGGGCTTGAAAGGAACGTCACCTAGACTAAAGTCTGATAAGTTTGGTTCAAGCTCAGTTAGCAATCAGATAGGCTCAGGGTTTGTTTCATTGGAAGATCTTGCTCCATTGGCTATGGATAAAATTGAGGCACTTTCAATGGAGGGTTTGAGAATACAATCTGGGATGTCAGAAGAGGATGCACCATCAAACATCATTGCTGAATCCTATGGAGATATTTCAGGTCTCCAAGGCAAGGGGGTTGGCCTGGATGGTGCTGCAGCTTTGAAGTTGTTGGATATAAAAGACAGCAGCGCTGGTGTTGATGGGATAATGGGCCTGTCATTAACTCTTGATGAATGGATGAGACTGGATTCAGGTGACATTGATGATGATATAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCTGCCCATCATGCAAACTCTTTTGACTTAATATGCAAGAGTTCAAAGGGAGAGAAGAAACAAGGCAAAGGCCATTACAGAAAGTGCGGTTTGCTGGGAAACAATTTCACAGTAGCTTTAATGGTGCAACTTCGTGATCCTCTAAGAAATTATGAGCCTGTTGGTACACCAATGCTTGCTCTTATACAAGTTGAGAGAGTGTTTGTCCCACCAAGGCAAAAAATTTACAGGAGTATGTCTGAGGTCTGGAACAATAATGATGAGACTGATGAGTGTGAAATAGTAGCTAAGGTGGAGATGAAGGCCAACAAAGAGGATAAAAGTACTAAAGAGGAGAGAATTCCTCAGTTCAGAATTACAGAAGTCCATGTTGCAGGTCTGAAGACTGAACCTCACAAAAAGAAGCTTTGGGGTACTTCAAGTCAGCAACAGTCTGGTTCCCGCTGGTTGCTTGCTAATGGAATGGCTAAGACCAATAAGAATCCATTAATGAAGACAAAGGCTGCATCTAAATCTAGTGCTCCAGTCACCACAAAGGTACAACCTGGTGACACGTTGTGGAGCATATCATCTCGTATTTATGGCACTGGAGCAAAATGGAAGGAATTGGTAGCACTAAATCCACATATAAGAAATCCCAATATCATTATACCGAATGAAACTACAAGAGTACGTTGA 3429 0.4086 MHSSYFNFNPFKKTMLSKAEGDKSSSEDQNKLFLKDVETITKTLYHQKSSSRNSTSSKSKPNKEDNLRKDKKSIWNWKPLKALSLTRNKRFKCSFSLQVHLIEGLPLAFNDSSLCVHWKRRDEHMVTPPAKVVQGEAEFQEMLTYTCSINGSRSGPHNSAKYEAKHCFLYATMLGSPELDLGKHRIDLTSLLPLTLEDLEEEKSSGKWTTSFRLSGKARGAVMNVSFGYVVVGDNTGDTRENHSDPKSTLRQNSMVLMESNIKVIQSDRSIMRTGSLPSFTQYSPQNVDEVKDLHEVLPSSTSALASSIDRYEKFDEEKTCSPRHDKPELDVFKENIEQIELDTCCSSDTEKEMPEEHQGNEGKMCSPEPDKPEFSVFQENLETMKPDGYPLPDFGKENPEECEANGISGVAQGIELSSYEHVEVEESVVKHIVDAHTVDSAPTLDAVKQDSLDDLNDSYKESSVVHELSNIKDDLCTKELLLQELESALHKVSELERVALESPQIVEAKSGYKMRKSHSLDELTESVASEFLSMLGIDNSPMGLSFESEPESPRERLLRQFEKDTLSESFSLFGFDKGNDDKEYGGYDASFGSEQLKFSTGIKSEDVRSKQKGQMLEDLETEALMREWGLNEKAFQHSPPKDFAGFGSPIHLQPEEPLILPPLAEGLGPFLQTKDGGFLRSMNPSLFRSTKSGGKLIMQVSNPVVMPAEMGSGIMEILQYLASVGIEKLSKQANELMPLEDITGKTMQQVSWEADFKGTDRQCYLQQDLVTGQDSTCVQRGLKGTSPRLKSDKFGSSSVSNQIGSGFVSLEDLAPLAMDKIEALSMEGLRIQSGMSEEDAPSNIIAESYGDISGLQGKGVGLDGAAALKLLDIKDSSAGVDGIMGLSLTLDEWMRLDSGDIDDDIDNISEHTSKLLAAHHANSFDLICKSSKGEKKQGKGHYRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVERVFVPPRQKIYRSMSEVWNNNDETDECEIVAKVEMKANKEDKSTKEERIPQFRITEVHVAGLKTEPHKKKLWGTSSQQQSGSRWLLANGMAKTNKNPLMKTKAASKSSAPVTTKVQPGDTLWSISSRIYGTGAKWKELVALNPHIRNPNIIIPNETTRVR. 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00662 1142 MobiDBLite consensus disorder prediction 349 369 - -
Seca12g00662 1142 SUPERFAMILY LysM domain 1093 1138 IPR036779 -
Seca12g00662 1142 Coils Coil 479 499 - -
Seca12g00662 1142 CDD LysM 1096 1141 IPR018392 -
Seca12g00662 1142 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 15 1136 IPR039614 -
Seca12g00662 1142 ProSiteProfiles LysM domain profile. 1093 1141 IPR018392 -
Seca12g00662 1142 SMART LysM_2 1094 1142 IPR018392 -
Seca12g00662 1142 Pfam LysM domain 1096 1133 IPR018392 -
Seca12g00662 1142 ProSiteProfiles C2 NT-type domain profile. 83 231 IPR019448 -
Seca12g00662 1142 MobiDBLite consensus disorder prediction 44 68 - -
Seca12g00662 1142 MobiDBLite consensus disorder prediction 349 370 - -
Seca12g00662 1142 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 88 232 IPR019448 -
Seca12g00662 1142 Gene3D LysM domain 1082 1142 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00662 Seca-Chr12 5961642 5965639 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00662 - - cam:101503777 1338.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00662 12 5961642 5965639 Seca12g00662 12 5961642 5965639 ECH
Seca12g00662 12 5961642 5965639 Seca6g03737 6 104669989 104673653 PCT