Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03708 ATGGGTCGTCCAACCAAAACCACCCCAAAACCCTCTAAACTCGACGACATCCACCCTCTCACTCCCGCTCAAATCCACGAACCTTCTTCCCCTTCTCTTCCCCTCTCCACTCCTCTCCGTAGACGGAGCCTCCGTCTCGCCTCCGTTTCCACCTCTGATCCCGCCGCCGCAACTCCTAATTCCACCGCTAGGGTTTCTAATAGGAAGGGGAAGGGAAAGTTAGAGTCAAACGATTCGGAATGCGAGGGAGATGAAACGGAAAACGGTTTTCTGAACTTGCGGTCAGGAAAGAAGGTTCAAAAACGGGAAATGGCCAGTGAGCCCTGCGATGATTCGGAAAACGGTAGGAAGAGGAAAAAAGAAGAAGAAAGAGAAGAAAATGTTGCTGATTCGCCAGAGAAGAAAGAGAAAGGGAAGGCAATAGTGGTTGATGATGAATTAGACGTTGAATCCAAAATAGGTGTTAACAATTCAGCAGATAACTCAGCCTTGCGATATCGAGAACAGTTTAGAAACTCTAACAGAAGAGTGCAACGCTCGAGGAGGAATGAGTACATGGAACGGTTTCGGGACATAGCGAGGGAAAATGCATCTCGGTTTGCTCATTTCGTAAACCTTGACGATGAGCAATCAACTCCCGAGCCCGAGGAGGAGCAGCAGCAGGAGATTGAAGATTGGCCCGGTCCTTTCTCAACGGCTATGAAAATTATCAGAGACAGAGAGGAGAAAGGCATTCAAACAGGATGTGTTCCTTCGCAAAAAAGTTTAATCGATTCTATTGTGTGGGTTCCTAAAACGAAGAATACAGGGCACGCAGGTGCAAGGTTTTCGGTCCCCTCACTTCAAGAACTGTGCCTTCAAATTCTGGCCAGGAATGTGGATGCCATTGTTTCGCTCGAGAGTGTCCCGGATGCTCTGAGGCACAGGCTTAGCCAGTTGCTCTGTGACTCGAGAAAAATTAACAACCACTTTTTTGAACTTCTTGTTGGTGGAACTCCCACAGAGATTCGGCTAAGAGATAGCTCGTGGTTGACAGAGGAACAATTTACCAAGTCTTTTCAAACATGTGATACTTCCAATTTGGTGGTACTGCAACTTGACCAATGTGGGCGCTGTTTGCCAGATTATGTAGTAGTTGCTACTTTGGCACAGTCACCAGGACATTTACCTAGATTAACTACTCTATCTCTCAGTGGTGCATGCCGACTTTCAGATGGGGGGTTGCGTGCACTCGTTTCTTCTGCTCCAGCACTTAGATCGATAAATCTCAGCCAGTGCTCCCTTCTCACATCTGCCAGTCTCTATATTTTGGCTGAATCATCAAAATCTCTTCTGAAAGAGTTGTACCTTGATGATTGCCAAGGCATTGATGCTGCACTAATTGTGCCAGCACTGGTGGAGCTTGAACATTTAGAAGTGTTGTCAGTGGCTGGTATTCAAACTGTTTGTGATAAGTTTCTCAAGGATTACATTGTTGCACGTGGTCACAACATGAAAGAGCTTGTTCTGAAGGACTGTATAAACTTGACCGATGCATCAATCAAAGTTATTGCCGAACACTGCCCTGAATTATGTGTGCTTGATCTTATGAACTTATGCAAATTAACGGATTTATCCATAGGATATCTTACAAATGGTTGTCGTGCACTTCATACTCTGAAGCTTTGCCGTAATCCATTCAGTGATGATGCAATTGCTGCATTTGTTGAGACCACTGGAGAGTCCTTGAAAGAACTGTCACTTAATAACATTAAGAAGGTTGGTTACCACACAGCCTCATCACTTGCAAGCCATGCGAAAAATGTGCATAGTCTAGATCTGTCTTGGTGCCGAAATTTGACAGACAATGCTTTGGGTTTGATAGTGGATAGCTGCTTGGCGCTGAGACTACTTAAACTTTTTGGATGCACTCAGGTAACAGATGTTTTTCTGAACGGCCACTCAAACTTGCAGATCCAGATAATTGGTTTGAAGATGTCTCCTGTTTTACAACATGTCAAAGTGCCGGATCCTCTTCAAGGTGCGTTGAATTATTCATCAGTCACGGTAGATTTGGTATAA 2061 0.4498 MGRPTKTTPKPSKLDDIHPLTPAQIHEPSSPSLPLSTPLRRRSLRLASVSTSDPAAATPNSTARVSNRKGKGKLESNDSECEGDETENGFLNLRSGKKVQKREMASEPCDDSENGRKRKKEEEREENVADSPEKKEKGKAIVVDDELDVESKIGVNNSADNSALRYREQFRNSNRRVQRSRRNEYMERFRDIARENASRFAHFVNLDDEQSTPEPEEEQQQEIEDWPGPFSTAMKIIRDREEKGIQTGCVPSQKSLIDSIVWVPKTKNTGHAGARFSVPSLQELCLQILARNVDAIVSLESVPDALRHRLSQLLCDSRKINNHFFELLVGGTPTEIRLRDSSWLTEEQFTKSFQTCDTSNLVVLQLDQCGRCLPDYVVVATLAQSPGHLPRLTTLSLSGACRLSDGGLRALVSSAPALRSINLSQCSLLTSASLYILAESSKSLLKELYLDDCQGIDAALIVPALVELEHLEVLSVAGIQTVCDKFLKDYIVARGHNMKELVLKDCINLTDASIKVIAEHCPELCVLDLMNLCKLTDLSIGYLTNGCRALHTLKLCRNPFSDDAIAAFVETTGESLKELSLNNIKKVGYHTASSLASHAKNVHSLDLSWCRNLTDNALGLIVDSCLALRLLKLFGCTQVTDVFLNGHSNLQIQIIGLKMSPVLQHVKVPDPLQGALNYSSVTVDLV. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03708 686 MobiDBLite consensus disorder prediction 1 138 - -
Seca6g03708 686 MobiDBLite consensus disorder prediction 25 67 - -
Seca6g03708 686 Gene3D Ribonuclease Inhibitor 487 669 IPR032675 -
Seca6g03708 686 FunFam RNI-like superfamily protein 271 489 - -
Seca6g03708 686 Gene3D Ribonuclease Inhibitor 282 486 IPR032675 -
Seca6g03708 686 FunFam F-box/LRR protein 494 671 - -
Seca6g03708 686 SUPERFAMILY RNI-like 358 583 - -
Seca6g03708 686 MobiDBLite consensus disorder prediction 96 138 - -
Seca6g03708 686 PANTHER UNCHARACTERIZED 278 458 - -
Seca6g03708 686 SMART LRR_CC_2 521 546 IPR006553 -
Seca6g03708 686 SMART LRR_CC_2 625 650 IPR006553 -
Seca6g03708 686 SMART LRR_CC_2 415 440 IPR006553 -
Seca6g03708 686 SMART LRR_CC_2 599 624 IPR006553 -
Seca6g03708 686 SMART LRR_CC_2 389 414 IPR006553 -
Seca6g03708 686 SMART LRR_CC_2 547 571 IPR006553 -
Seca6g03708 686 SMART LRR_CC_2 495 520 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03708 Seca-Chr6 104343073 104347503 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03708 K15082 - gmx:100808150 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03708 6 104343073 104347503 Seca6g03708 6 104343073 104347503 ECH
Seca12g00634 12 5712512 5717300 Seca6g03708 6 104343073 104347503 PCT