Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00634 ATGGACCCATCCAATTCCAATAATAATAATAAAAAAAGTGACCCAAAATCAAAACCCCCAAGTCCCCAAGGCCAAGGCCAAGGTAGTGCTTCTCCTTTTCAACACTCTCTCTCCCCTCTCGAATTGCAAGTGGTTTTACTCTTAACGGAGATGAAAAAGAAGGCTAATGCCTCTAACTCTCATCCCCTTCAAAATGAAAGACCCGATTTCGTGAGAGTAACCGATCAAAACGATGACTTTGCTCGAGGAAAGAGAAAGATCGATTTTGATACCAGTAGCAGTGAAAGCGATGATGGATTCAACAGAGAAGAAGAAGAAGAAGACGAAAGGAAGGAGCCTCTGGTTGAAATTGATTTCTTTGCGAATGAAGTTCAACATGAACACCAATCAGATGAAAACATTGACTCTGATAATAATGCTGCACCCTACCAACAAGCATATTATGATCATCTGCGAAATATGGCTTCTTACAGAATGCGAGAAGCCCGACGAAGGGCTAAGATAACTGCACCTAGCTTAGCTTATTTTGTTCCAGAAGATGATGCTGGATCGTTATCTCCTCAAGTGGTAGAACATGAAATTGGTGACCCTTCAGCTCCTTTCTCTCTGGCTATGAAAGCTATTAAGAATCGAAGCACATCCTTTACATGGGTTCCCAAAAGGAATCAAGAACATGTGGGTGGGAGGTTTTCAGTCCCTTCCTTGCAAGAACTTTGCCTTAAGATTCTTGTTGATAATGCTGATTCAATTGTTTCACTTGATGGTGTCCCTGATGAACTGAGGCACAGGCTTAGCCGGTTGCTCTGTGACTCGAGGAAAATGAATGGTCGCTTCTTTCAACTTCTTCTTAATGGGTTTCCCACAGAGATTCGGTTAAAAGATTGCTCATGGTTGACAGAGGAAGAGTTTACTAAATGTTTTCAAACGTTTGACACTGCTGGATTGGAGGTCCTACAACTTGACCAGTGTGGACGATGTATACCCGATTATGCATTAAGTGCTACTTTGGCACAGTCACCGGGGTGGTTGCCTAGATTAATAAGTCTATCCCTCAGTGGTGCATGCCGTCTTTCAGATAAAGGGTTGCACGCACTAGTTTCTTCTGCCCCAGTACTTAGATCCATAAATCTAAGCCGGTGCTCCCTTCTCACAGCTGCCAGTGTTAATATTTTGGCTGAATCATTAGGATCACTTCTGAAAGAGTTGTATCTTGATGATTGCCAAATCACTGATGCTGCTGAAATTGTGCCAGCACTGAAGCAACTTGAACATTTAGAAGTGTTATCATTGGCTGGCATTCAAACTGTTTGTGATGAACTTGTCAAGGATTACATCATTGCACGTGGTCACAACATGAAGGAGCTTATTTTAAAGGACTGTGTAAAATTGACTGATGCATCAATGAAAGTTGTTGCTGAACACTGTCCTGGGTTGCTTGCACTTGATCTTATGAACTTGAGCAAATTGACAGATTTATCCATAGGATATATTGCAAATAGTTGTCAAGCACTTAATACATTGAAACTCTGTCGCAATCCATTCAGCGATGAAGCAGTTGCTGCATTTTTGGAGACCAGTGGAGAGTCCTTGGAAGAACTTTCACTTAATAACATTAAGAAGGTTGGCCAACAGACAACCTTATCACTTGCCAGCCATGGCAAAAATTTGCATACTCTAGATCTATCTTGGTGTCGAAATTTGTCAGACAATGAGTTGGGTTTGATTGTAGATAGCTGCATCTCGCTGAGGTCACTTAAACTTTTTGGATGCACACAGGTAACAGATGTTTTTCTGAATGGGTACTCAAACCCAGGGATTCAGATCATTGGGTTGAAGATGTCTCCTCTGTTGCAACATGTCAAAGGGCCTAATCCTCATCAAGGTGCTTTGCGTTATTCATCAGTCTCAGTAAATGATATATATCAGAATCAGAAATGA 1938 0.4154 MDPSNSNNNNKKSDPKSKPPSPQGQGQGSASPFQHSLSPLELQVVLLLTEMKKKANASNSHPLQNERPDFVRVTDQNDDFARGKRKIDFDTSSSESDDGFNREEEEEDERKEPLVEIDFFANEVQHEHQSDENIDSDNNAAPYQQAYYDHLRNMASYRMREARRRAKITAPSLAYFVPEDDAGSLSPQVVEHEIGDPSAPFSLAMKAIKNRSTSFTWVPKRNQEHVGGRFSVPSLQELCLKILVDNADSIVSLDGVPDELRHRLSRLLCDSRKMNGRFFQLLLNGFPTEIRLKDCSWLTEEEFTKCFQTFDTAGLEVLQLDQCGRCIPDYALSATLAQSPGWLPRLISLSLSGACRLSDKGLHALVSSAPVLRSINLSRCSLLTAASVNILAESLGSLLKELYLDDCQITDAAEIVPALKQLEHLEVLSLAGIQTVCDELVKDYIIARGHNMKELILKDCVKLTDASMKVVAEHCPGLLALDLMNLSKLTDLSIGYIANSCQALNTLKLCRNPFSDEAVAAFLETSGESLEELSLNNIKKVGQQTTLSLASHGKNLHTLDLSWCRNLSDNELGLIVDSCISLRSLKLFGCTQVTDVFLNGYSNPGIQIIGLKMSPLLQHVKGPNPHQGALRYSSVSVNDIYQNQK. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00634 645 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g00634 645 PANTHER UNCHARACTERIZED 234 426 - -
Seca12g00634 645 Gene3D Ribonuclease Inhibitor 284 397 IPR032675 -
Seca12g00634 645 MobiDBLite consensus disorder prediction 54 112 - -
Seca12g00634 645 FunFam RNI-like superfamily protein 226 443 - -
Seca12g00634 645 SUPERFAMILY RNI-like 290 595 - -
Seca12g00634 645 SMART LRR_CC_2 553 578 IPR006553 -
Seca12g00634 645 SMART LRR_CC_2 579 612 IPR006553 -
Seca12g00634 645 SMART LRR_CC_2 369 394 IPR006553 -
Seca12g00634 645 SMART LRR_CC_2 449 474 IPR006553 -
Seca12g00634 645 SMART LRR_CC_2 501 525 IPR006553 -
Seca12g00634 645 SMART LRR_CC_2 343 368 IPR006553 -
Seca12g00634 645 SMART LRR_CC_2 527 552 IPR006553 -
Seca12g00634 645 SMART LRR_CC_2 475 500 IPR006553 -
Seca12g00634 645 FunFam DNA repair protein rhp7 isoform A 529 628 - -
Seca12g00634 645 MobiDBLite consensus disorder prediction 71 98 - -
Seca12g00634 645 Gene3D Ribonuclease Inhibitor 398 618 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00634 Seca-Chr12 5712512 5717300 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00634 K15082 - gmx:100798274 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00634 12 5712512 5717300 Seca12g00634 12 5712512 5717300 ECH
Seca12g00634 12 5712512 5717300 Seca6g03708 6 104343073 104347503 PCT