Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03612 ATGGCTTCAGTATCACTCTCATTTTCTTCTTCCATTCTTCCTTCTCCCATTCCCCATACCAAATCCAACGCGAACCCGATAACCCAAGACCCGATTTTTCGGGTTACCCGCTGCTCAATTTCAGCTCCGGCGTCAAAAACAGCCGTTTCTGCTGCACCTTCTTCTATTTCATCGCAAAACAGACACCGGAAAGAAGATGAATTTCCTGAAGGATTGTTTTTTGAGGGTACAACGAAGACACCCATTAATAACAAGAAGAAGAAGAAGAAAAAGGTGAAGGAAGACAAGAACAATCGTAAGGCATGGGCTCACACTCTCACCGAAGCCTTATCCTATTCCATTCACAAGAAGCAATGGATTAGAGCCCTTGAGTTATTTGACATTCTTAGAGAGCAACCCTATTACCAACCCAGAGAAGATACTTACATGAAACTCATTGTGTTGCTTGGAAAATCTGGTCAACCCCATCGTGCCCATCAGCTTTTTGACACTATAAAAGAAGAAGGCTGTGAAAGTACAGAACTTTACACAGCCTTAATTGCAGCATATTGTCAGAACAACCTGGTTGATGAGGCGATTTTGACTCTTGATGAGATGAAGAACCTTCCTCAATGCCAGCCTGACGTTTCCACTTTCAGTACCTTGATAAAAGCTTATGTGGATGCTTTGAAATTTGAATTGGTTGAGTTGCTGTATGAAGAAATGGCTGAAAGATCTATCACACCAAACACTTCCACCCAGAATATTGTCCTGAGTGGTTATGGTAAGGCTGGGAGGTTTGATCAGATGGAGAAAATGCTGTCAAGTATGTTGGAGAGCACTACATGCAAGCCTGATGTTGGGACAATGAACACAATCATCAGTGTCTTTGCTAATAAAGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGTAATTTTGGGATACAACCGGAAGCGCACACTTTTAATATTTTGATTGTAGCTTATGGGAATGAAAGACTGTATGACAAAATGTCATCTGTTATGCAGTATATGCGCAAGGTACGATGTCCATGGACAACCTCAACTTATAACACTGTGATTGAGGCATTTGCAGCCATAGGTGATGCTGAAAACATGGAGAGTGCATATGATCAGATGTGTGTTGAGGGTTTGAAAGCTGATACCAAGACATTTTGCTGCCTTATCAATGGTTATGGTAATGCAGGTATCTTCCATAAAGTAATTAGCAGTGTTAATTTGGCTGGGAAGCTTCAGATACGTGAAAATACTTCCTTTTACAATGCAGTCATATCTGCATGTGCAAAGGAAGAGGCTTTGATGGAAATGGAAAGCATTTTCAAGCGCATGAAAGAAAAAAAGTGTCAACCAGATGACACAACATACTCTGTCATGATTGAGGCATACAGAAAAGAAGGTATGAATGACAAGATACACTACTTGGAGCAGGAAAAGCAGATGATGACATCTGATGACAAAAGGTTGAGTGAGCCTGAGGAGGCATTCCTGGGTTGA 1503 0.4112 MASVSLSFSSSILPSPIPHTKSNANPITQDPIFRVTRCSISAPASKTAVSAAPSSISSQNRHRKEDEFPEGLFFEGTTKTPINNKKKKKKKVKEDKNNRKAWAHTLTEALSYSIHKKQWIRALELFDILREQPYYQPREDTYMKLIVLLGKSGQPHRAHQLFDTIKEEGCESTELYTALIAAYCQNNLVDEAILTLDEMKNLPQCQPDVSTFSTLIKAYVDALKFELVELLYEEMAERSITPNTSTQNIVLSGYGKAGRFDQMEKMLSSMLESTTCKPDVGTMNTIISVFANKGQIDMMEKWYEKFRNFGIQPEAHTFNILIVAYGNERLYDKMSSVMQYMRKVRCPWTTSTYNTVIEAFAAIGDAENMESAYDQMCVEGLKADTKTFCCLINGYGNAGIFHKVISSVNLAGKLQIRENTSFYNAVISACAKEEALMEMESIFKRMKEKKCQPDDTTYSVMIEAYRKEGMNDKIHYLEQEKQMMTSDDKRLSEPEEAFLG. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03612 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Seca6g03612 500 PANTHER EXPRESSED PROTEIN 67 485 IPR044179 GO:0003729
Seca6g03612 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 278 IPR002885 -
Seca6g03612 500 MobiDBLite consensus disorder prediction 1 26 - -
Seca6g03612 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Seca6g03612 500 NCBIfam pentatricopeptide repeat 316 349 IPR002885 -
Seca6g03612 500 NCBIfam pentatricopeptide repeat 211 244 IPR002885 -
Seca6g03612 500 NCBIfam pentatricopeptide repeat 246 280 IPR002885 -
Seca6g03612 500 NCBIfam pentatricopeptide repeat 352 384 IPR002885 -
Seca6g03612 500 NCBIfam pentatricopeptide repeat 141 172 IPR002885 -
Seca6g03612 500 NCBIfam pentatricopeptide repeat 175 208 IPR002885 -
Seca6g03612 500 NCBIfam pentatricopeptide repeat 282 313 IPR002885 -
Seca6g03612 500 NCBIfam pentatricopeptide repeat 423 454 IPR002885 -
Seca6g03612 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Seca6g03612 500 Gene3D Tetratricopeptide repeat domain 203 272 IPR011990 GO:0005515
Seca6g03612 500 Gene3D Tetratricopeptide repeat domain 406 485 IPR011990 GO:0005515
Seca6g03612 500 Gene3D Tetratricopeptide repeat domain 343 405 IPR011990 GO:0005515
Seca6g03612 500 Gene3D Tetratricopeptide repeat domain 77 202 IPR011990 GO:0005515
Seca6g03612 500 Gene3D Tetratricopeptide repeat domain 273 342 IPR011990 GO:0005515
Seca6g03612 500 Pfam PPR repeat 248 273 IPR002885 -
Seca6g03612 500 Pfam PPR repeat 141 170 IPR002885 -
Seca6g03612 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Seca6g03612 500 Pfam PPR repeat family 175 219 IPR002885 -
Seca6g03612 500 Pfam PPR repeat family 419 465 IPR002885 -
Seca6g03612 500 Pfam PPR repeat family 278 324 IPR002885 -
Seca6g03612 500 Pfam PPR repeat family 350 395 IPR002885 -
Seca6g03612 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03612 Seca-Chr6 103397536 103399889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03612 108 480 Glycosyltransferase AT1G05670 21.900 6.47e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03612 - - gmx:100776657 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03612 6 103397536 103399889 Seca6g03612 6 103397536 103399889 ECH
Seca12g00495 12 4418283 4420447 Seca6g03612 6 103397536 103399889 PCT