Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00495 ATGGCCTCCATATCTCTTTCGTTCTCTTCTTCCATCGTTCCCTCTCCACTTTCCCACGATAAATGCAAGAAAACTCACAACCCCAGATCCCAAGATCAAATTTTTAGGGTTACCCGCAACTCAATTTCAGCTCCAGCGACCAAAACTGCTTCTGATTCGGTTCCCAAAAAGAAACACTGGAAACAAGGCGAGTTTCCTGGTATTTCGGAAAGATCGTTTCGTGGGAGTACAGGGAGGATCCCCATTAAGAATTTGAAGAAAAAATTGGACAAAAAGAACGATGCTAAGGCCTGGGTCAACACTGTTACCGAAGCCTTATCTGAACGCATTGACAAGAAGCAGTGGCTTCAAGCCCTTGAGGTATTTGACATGCTTAAAGAACAATCCTTTTACCAGCCCAGAGAAGGGACTTACATGAAACTCATTGTTTTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCATGAGCTTTTTAACACAATGATTGAAGAAGGTTGTGACCCTACTCCTGAACTATACACAGCATTACTTACTGCATATTGCAGGAGCAACCTGCTTGATGAGGCTTTTTCAATTCTCAATGAGATGAAGAACCTTCCTCTTTGCCAACCTGATGTTTTCACTTACAGTACCTTAATAAAAGCCTGTGTGGATGCTTTCAAATTTGAATTGGTTGAGTTGCTGTATCAAGAAATGGCTGGAAGATCTATCACACCTAACACTGTCACTCAGAACATTGTTTTGAGTGGTTATGGCAAGGCAGGGAAGTTTGATCAGATGGAGAAAGTGCTTTCAAGTATGCTGCAGAGCACTACATGCAAGCCTGATGTTTGGACAATGAACACAATCATCAGTGTCTTTGCTAATATGGGTCATATTGATATGATGGAGAAATGGTATGAAAAGTTTCGGAATTTTGGGATAGAACCGGAAACGCGCACTTTTAATATTTTGATTGGTGCCTATGGAAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGGAAGTTGCAATTTCCTTGGACCACCTCTACTTATAACAATGTGATTGAGGCATTCTCAGATGTTGGTGATGCCAAAAACATGGAGTATACATTTGATCAGATGCGTTCTGAGGGTATGAAAGCAGATACCAAGACCTTTTGCTGCCTTATCAATGGTTTTGCAAATGCAGGTCTCTTCCATAAAGTAATTAGCAGTGTTCGCTTGGCTGAGAAGCTTGAGATACCTGAGAATACTGCCTTTTATAATGCAATCTTATCTGCATGTGCAAAAGCTGAGGATTTGATGGAAATGGAGAGAGTTTTCAAGCGAATGAAAGATAACCAATGTCAACCAGATGACACAACATACTTGATCATGGTTGAAGCATATAGAAAAGAGGGTATGAATGACAAGATATACTATTTGGAGCAGGAAAAGGAAACATGGGTAACTGATGATAAAAAAGTGAGCCAGCCTGAGGATGATATCTTTAGTTGA 1494 0.407 MASISLSFSSSIVPSPLSHDKCKKTHNPRSQDQIFRVTRNSISAPATKTASDSVPKKKHWKQGEFPGISERSFRGSTGRIPIKNLKKKLDKKNDAKAWVNTVTEALSERIDKKQWLQALEVFDMLKEQSFYQPREGTYMKLIVLLGKSGQPHRAHELFNTMIEEGCDPTPELYTALLTAYCRSNLLDEAFSILNEMKNLPLCQPDVFTYSTLIKACVDAFKFELVELLYQEMAGRSITPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFANMGHIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRSEGMKADTKTFCCLINGFANAGLFHKVISSVRLAEKLEIPENTAFYNAILSACAKAEDLMEMERVFKRMKDNQCQPDDTTYLIMVEAYRKEGMNDKIYYLEQEKETWVTDDKKVSQPEDDIFS. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00495 497 Gene3D Tetratricopeptide repeat domain 87 269 IPR011990 GO:0005515
Seca12g00495 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Seca12g00495 497 NCBIfam pentatricopeptide repeat 420 451 IPR002885 -
Seca12g00495 497 NCBIfam pentatricopeptide repeat 242 277 IPR002885 -
Seca12g00495 497 NCBIfam pentatricopeptide repeat 349 381 IPR002885 -
Seca12g00495 497 NCBIfam pentatricopeptide repeat 279 310 IPR002885 -
Seca12g00495 497 NCBIfam pentatricopeptide repeat 314 342 IPR002885 -
Seca12g00495 497 NCBIfam pentatricopeptide repeat 137 169 IPR002885 -
Seca12g00495 497 NCBIfam pentatricopeptide repeat 172 198 IPR002885 -
Seca12g00495 497 NCBIfam pentatricopeptide repeat 207 241 IPR002885 -
Seca12g00495 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 275 IPR002885 -
Seca12g00495 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Seca12g00495 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Seca12g00495 497 MobiDBLite consensus disorder prediction 1 76 - -
Seca12g00495 497 Gene3D Tetratricopeptide repeat domain 403 483 IPR011990 GO:0005515
Seca12g00495 497 Gene3D Tetratricopeptide repeat domain 270 340 IPR011990 GO:0005515
Seca12g00495 497 Gene3D Tetratricopeptide repeat domain 341 402 IPR011990 GO:0005515
Seca12g00495 497 Pfam PPR repeat family 275 322 IPR002885 -
Seca12g00495 497 Pfam PPR repeat family 173 217 IPR002885 -
Seca12g00495 497 Pfam PPR repeat family 347 394 IPR002885 -
Seca12g00495 497 Pfam PPR repeat family 416 462 IPR002885 -
Seca12g00495 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Seca12g00495 497 MobiDBLite consensus disorder prediction 31 50 - -
Seca12g00495 497 MobiDBLite consensus disorder prediction 1 16 - -
Seca12g00495 497 PANTHER EXPRESSED PROTEIN 36 477 IPR044179 GO:0003729
Seca12g00495 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Seca12g00495 497 Pfam PPR repeat 137 166 IPR002885 -
Seca12g00495 497 Pfam PPR repeat 245 269 IPR002885 -
Seca12g00495 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Seca12g00495 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00495 Seca-Chr12 4418283 4420447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00495 132 477 Glycosyltransferase AT1G05670 23.410 3.57e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00495 - - aip:107635404 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00495 12 4418283 4420447 Seca12g00495 12 4418283 4420447 ECH
Seca12g00495 12 4418283 4420447 Seca6g03612 6 103397536 103399889 PCT