Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03349 ATGGAACTCCGTCGCCGTTCCCAGGACGGTGGCGCCGCCGCAGGATCTCCATCTCCGGCGGCCAAAGCCTCCGACGCCCTCCCCCTCCCTCTCCACCTCACCAATGCCTTCTTCTTCACCCTCTTCTTCTCCCTAGCTTACTACCTCCTCCACCGCTGGCGTGACAAGATCCGTTCCTCTTCCCCTCTCCACCTTCTCTCCCTCTCCGACATCGCCGCCATTGTCGCTCTCATCGCCTCCTTCATCTACCTCCTCGGCTTCTTCGGCATCCACTTCGTCCAATCCTTCGTCCCCATCGCCGCCACCACCACCACCTCCTCCTCCTCCTCCTCGCGTCCCTCCGACAACAACCTCCCTGACCGTGAATTCCCCAAATCACCCCCGCCGGAGTCCCAAGCTTCCTCCGACATCGTCGACTCCGTCGTCGCCGGCACAATCCCTTCCTACTCCCTCGAGTCTCGCCTCGGCGACTGCTTCCGCGCCGCCGAGATCCGCCGTGAGGCGCTGCAGAGGGTTACCGGAAGGTCCCTGAAGGGGCTTCCACTGGAAGGGTTCGACTACGAGACGATTTTGGGGCAGTGCTGCGAGATGCCGGTGGGGTACGTGCAGGTTCCGGTGGGGGTTGCGGGGCCGTTGTTGTTGGATGGGGAAGAGTACACGGTGCCGATGGCCACCACGGAAGGGTGTTTGGTGGCAAGTACAAATAGAGGGTGTAAGGCAATTTATGCTTCTGGTGGAGCCAGCAGTGTGGTTTTGAAGGATGCGATGAGTAGAGCACCTGTTGTGAGATTCGCAAGTGCTGATAGAGCTGCACAGCTTAAGCTCTTCTTGGAGGATCCTCTCAATTTTGATACCTTGGCTGTCGTTTTCAATAGGTCGAGTAGATTTGCCAGGCTTCAAAATATTAAGTGTTCTATTGCCGGGAAGAATGTTTATGCAAGATTTACATGTAGCACGGGTGATGCCATGGGGATGAACATGGTCTCCAAAGGGGTGCAGAATGTCCTTGATTTCCTTCAAAATGATTTCTCAGACATGGACGTTATTGGCATATCTGGTAATTACTGTTCGGATAAGAAACCTGCTGCAATAAACTGGATTGAGGGACGTGGGAAGTCAGTTGTTTGTGAAGCAACTATCAAAGAAGATGTGGTGAAGAAGGTACTGAAGACCAATGTAGCTGCCTTGGTAGAGCTTAACATGCTCAAAAACCTTACTGGTTCTGCTGTTGCTGGTGCTCTTGGTGGATATAATGCCCATGCCAGCAACATAGTTTCCGCCATTTTCATAGCCACTGGTCAAGATCCAGCTCAAAATGTTGAGAGTTCCCAATGCATAACCATGATAGAAGCCGTCAATGGTGGGAGAGACCTTCACATCTCAGTAACTATGCCCTCCATTGAGGTGGGTACAGTTGGGGGTGGAACTCAACTGGCATCTCAATCCGCATGCTTGAATCTACTTGGTGTGAAGGGTGCAAGCAAGGATTCACCAGGATCAAACTCAAGACTCTTGGCCACCATTGTTGCTGGATCCGTTCTAGCAGGGGAGCTGTCCTTGATGTCTGCTATAGCTGCAGGACAGTTAGTCAAGAGCCACATGAAATACAATAGATCATGCAAAGATATATCATCAATGTCATCCTGA 1647 0.5264 MELRRRSQDGGAAAGSPSPAAKASDALPLPLHLTNAFFFTLFFSLAYYLLHRWRDKIRSSSPLHLLSLSDIAAIVALIASFIYLLGFFGIHFVQSFVPIAATTTTSSSSSSRPSDNNLPDREFPKSPPPESQASSDIVDSVVAGTIPSYSLESRLGDCFRAAEIRREALQRVTGRSLKGLPLEGFDYETILGQCCEMPVGYVQVPVGVAGPLLLDGEEYTVPMATTEGCLVASTNRGCKAIYASGGASSVVLKDAMSRAPVVRFASADRAAQLKLFLEDPLNFDTLAVVFNRSSRFARLQNIKCSIAGKNVYARFTCSTGDAMGMNMVSKGVQNVLDFLQNDFSDMDVIGISGNYCSDKKPAAINWIEGRGKSVVCEATIKEDVVKKVLKTNVAALVELNMLKNLTGSAVAGALGGYNAHASNIVSAIFIATGQDPAQNVESSQCITMIEAVNGGRDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSCKDISSMSS. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03349 548 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 469 476 IPR023076 GO:0004420
Seca6g03349 548 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 135 538 IPR004554 GO:0004420|GO:0005515|GO:0008299
Seca6g03349 548 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 256 371 IPR009023 -
Seca6g03349 548 Gene3D - 205 533 IPR023074 GO:0004420
Seca6g03349 548 Pfam Hydroxymethylglutaryl-coenzyme A reductase 162 538 IPR002202 GO:0004420|GO:0015936
Seca6g03349 548 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 130 204 - -
Seca6g03349 548 MobiDBLite consensus disorder prediction 1 21 - -
Seca6g03349 548 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 523 536 IPR023076 GO:0004420
Seca6g03349 548 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 255 371 - -
Seca6g03349 548 CDD HMG-CoA_reductase_classI 135 538 IPR004554 GO:0004420|GO:0005515|GO:0008299
Seca6g03349 548 Gene3D - 255 371 IPR009023 -
Seca6g03349 548 Gene3D - 125 204 IPR023282 GO:0004420
Seca6g03349 548 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 18 541 IPR002202 GO:0004420|GO:0015936
Seca6g03349 548 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 134 538 IPR002202 GO:0004420|GO:0015936
Seca6g03349 548 MobiDBLite consensus disorder prediction 104 135 - -
Seca6g03349 548 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 314 328 IPR023076 GO:0004420
Seca6g03349 548 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 362 533 - -
Seca6g03349 548 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 133 527 IPR009029 GO:0015936|GO:0016616
Seca6g03349 548 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 194 215 IPR002202 GO:0004420|GO:0015936
Seca6g03349 548 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 312 330 IPR002202 GO:0004420|GO:0015936
Seca6g03349 548 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 352 377 IPR002202 GO:0004420|GO:0015936
Seca6g03349 548 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 457 478 IPR002202 GO:0004420|GO:0015936
Seca6g03349 548 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 221 241 IPR002202 GO:0004420|GO:0015936
Seca6g03349 548 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 403 429 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03349 Seca-Chr6 100572620 100576198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03349 4 544 Lipid Metabolism Gene Families AT1G76490 74.414 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03349 K00021 - gmx:100784330 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03349 6 100572620 100576198 Seca12g03133 12 62284035 62287197 ECH
Seca6g03349 6 100572620 100576198 Seca6g03349 6 100572620 100576198 ECH