Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03133 ATGGACGTTCGCCGGAGACCCGTCCGTTCACCCCCCGCCGCCGGCGAACGCCTCAAAACCCAGAAGCTTAACAACCCTGGCGACTCCTCACAAACGGTGCCTCTTTGCATCACCAACGCCGTGTTCTTTGGCCTCTTCTTCTCCGTCGCTTACTTCCTCCTCCACCGCTGGCGCGAGAAGATCCGCAACTCCACTCCGCTCCACGTCGTCACCGCCTCTGAAACCGCCGCTATCGTAACCCTCATCGCCTCCGTCGTCTACCTCCTCGGCTTCTTTGGCATCGGTTCCCGCGCTTCCTCCTTCGATGATCTCTCCGACGAAGAGATCCTCGTCAAGGAAGATGCGCGGAAGCCTGGTCCGTGTCCCGCCGCTCTCGTCGATTCCACCGCCATGGTAGCAGCACCAACGACGGTGGTGACGGTTCCTTCGCCCAAGATCGTGGACATTGCACCGATTACACTATCAACTGAAGACGAGGAAATCGTGAAATCGGTAGTTTCCGGTTCGATCCCTTCGTACTCGCTGGAATCGCGGCTCGGGGATTGTCGTAGAGCGGCGGCGATTCGACGTGAAGCGGTGCAGAGGATAACGACGAGGTCGTTGGAGGGTTTGCCTTTGGAAGGGTTCGATTACGAATCGATATTGGGGCAGTGCTGTGAGATGCCGATAGGGTTTGTGCAGATTCCGGTGGGGATAGCAGGCCCGTTGTTGTTGGACGGGAAGGAGTACACGGTGCCAATGGCTACCACTGAGGGTTGTCTCGTGGCTAGCACAAACAGAGGGTGCAAGGCTATTTACGCTTCCGGTGGAGCTTCCTCGTTTTTGCTTAGGGATGGCATGACTAGAGCACCCGTTGTTCGTTTCCCTACTGCTAAAAGAGCTGCACAGTTGAAGTTCTTCTTGGAAGATCCCCTCAATTTTGATTCCCTCTCTGTCGTTTTCAACAAGTCAAGCAGATTTGCCAGATTACAGAGCATTCAGCCTGCTATTGCTGGAAAGAATTTGTACATTAGATTCCGTTGCAGCACTGGTGATGCCATGGGGATGAACATGGTATCAAAAGGTGTCCAAAATGTCCTTGATTTCATTCAAAACGAATTCCCTGACATGGATGTTATTGGAATCTCTGGAAATTTCTGTTCGGACAAGAAAGCTGCAGCTGTGAACTGGATTGAAGGGAGGGGAAAGTCTGTGGTCTGCGAGGCTATAATTAAGGAAGAGGTGGTGAAGAAAGTTTTGAAGACTAATGTGGAGGCCCTAGTTGAGCTTAACATGCTTAAGAACCTAACTGGCTCAGCCATCGCTGGTGCTCTTGGTGGGTTCAATGCCCATGCTAGCAATATTGTCACTGCTGTCTACATAGCCACTGGTCAGGATCCTGCTCAGAATGTTGAGAGTTCTCATTGCATTACCATGATGGAAGCTGTGAATGATGGCAAGGACCTTCACATTTCTGTCACCATGCCTTCAATTGAGGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAATCAGCTTGTCTTAATTTACTTGGTGTCAAGGGTGCCAGCAAAGAATCTCCAGGTGCAAATTCTAGGCTACTGGCCACCATTGTAGCTGGTTCAGTCCTCGCAGGGGAGCTATCACTCATGTCTGCAATTGCAGCCGGGCAGCTTGTTAAGAGTCACATGAAATACAACAGATCTAGCAAGGATATATCCAAAGTCGTCTCATGA 1719 0.5148 MDVRRRPVRSPPAAGERLKTQKLNNPGDSSQTVPLCITNAVFFGLFFSVAYFLLHRWREKIRNSTPLHVVTASETAAIVTLIASVVYLLGFFGIGSRASSFDDLSDEEILVKEDARKPGPCPAALVDSTAMVAAPTTVVTVPSPKIVDIAPITLSTEDEEIVKSVVSGSIPSYSLESRLGDCRRAAAIRREAVQRITTRSLEGLPLEGFDYESILGQCCEMPIGFVQIPVGIAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYASGGASSFLLRDGMTRAPVVRFPTAKRAAQLKFFLEDPLNFDSLSVVFNKSSRFARLQSIQPAIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFIQNEFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVEALVELNMLKNLTGSAIAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDISKVVS. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03133 572 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 493 500 IPR023076 GO:0004420
Seca12g03133 572 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 154 228 - -
Seca12g03133 572 Gene3D - 279 395 IPR009023 -
Seca12g03133 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 336 354 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 218 239 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 427 453 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 376 401 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 481 502 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 245 265 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 547 560 IPR023076 GO:0004420
Seca12g03133 572 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 279 395 IPR009023 -
Seca12g03133 572 Gene3D - 229 557 IPR023074 GO:0004420
Seca12g03133 572 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 338 352 IPR023076 GO:0004420
Seca12g03133 572 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 279 395 - -
Seca12g03133 572 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 153 551 IPR009029 GO:0015936|GO:0016616
Seca12g03133 572 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 28 566 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 CDD HMG-CoA_reductase_classI 159 562 IPR004554 GO:0004420|GO:0005515|GO:0008299
Seca12g03133 572 Gene3D - 153 228 IPR023282 GO:0004420
Seca12g03133 572 Pfam Hydroxymethylglutaryl-coenzyme A reductase 186 562 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 158 562 IPR004554 GO:0004420|GO:0005515|GO:0008299
Seca12g03133 572 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 158 562 IPR002202 GO:0004420|GO:0015936
Seca12g03133 572 MobiDBLite consensus disorder prediction 1 28 - -
Seca12g03133 572 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 382 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03133 Seca-Chr12 62284035 62287197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03133 1 568 Lipid Metabolism Gene Families AT1G76490 69.514 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03133 K00021 - gmx:100811237 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03349 6 100572620 100576198 Seca12g03133 12 62284035 62287197 ECH
Seca12g03133 12 62284035 62287197 Seca12g03133 12 62284035 62287197 ECH