Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02982 ATGTGGCAGTTCATGGCTCTTCCTTGTGAACTTGCTCTGCTTATTCTTCAGTACTCATTATTGGTAGCATTGGTATCTTCTTCTGGACCTGGAACTGGCTGGAAAACATTGCAAGGATCTCCACCACTGGTCATAGCACGTGGTGGGTTTTCAGGGATATTTCCAGATTCAAGTTTACCTTCCTATAGTTTGGCACTAAATACTAGTGGTCCAAATGTCACTCTATGGTGTGATGTGCAATTGACAAAGGATGGAGTTGGGATTTGCTTTCCAGAACTCAAGCTGGACAATGCCACTGACATTTCCATTGCTTACCCTGGCAAAGCAAAGGATTACTCAGTTAATGGGGTTCCAACTCGGGGATGGTTTTCTGTGGATTACAACTCAAGTCAACTAGTAAATGTTTCCCTTGTTCAGGGAGTGTACTCTCGAACTAATAAGTTTGATGGCAGTAAATATCACATTCTCACTGTTGAAGATGTAGCCAAATTAGTAAAATCACCATCAACAGGCATGTGGTTAAATGTTCAGCATGATACATTCTACAAGCAACAGAATTTGAGTGTAGAAAATTTTCTACGGTCTCTCTCAACTAAACGAGTATCTGTCAATTACATCTCATCACCTGATGCAGATTTCTTAAAAAGAGTAAGATCAAACTTCAGTCCTAGAACAACCAGCCTAATCTTCAGGTTTCTAGAGCAGTATAAGATTGAACCTGCAACCAAGCAGACTTATGGTGCACTCTTGAAAAATCTCACGTTTATCAGGACATTTGCTTCTGGAATTCTTGTTCCCAAGGGCTATATATGGCCTGTAGACTCAGATCTTTATCTACAGCCACATACCTCACTTGTCTCAGATGCTCATAAACAAGGGCTGCAAGTTTTTGTTTCAGAACTTGTTAATGATGTTCCATTTAGCTACAATTTTAGTTATGATCCTCAGGCTGAGTGTCTGTCTTTCATTGACAATAATGCCTTTTCTGTTGATGGTGTGCTGTCTGACTTCCCAGTAACTCCATCTGCAGCCATAAATTGCTTTTCTGGCCTACGGGAAAATGCCAAAAAGCAAGTGGAGACTTTGGTTATCACAAAATATGGAGCAAGTGGAGACTATCCTGCTTGTACTGATCTTGCATATAAGCAAGCTAAATCAGATGGAGCAGATGTACTTGACTGCCCTGTTCAAATGTCCAGTGATGGAATACCCTTTTGCTTGAGCTCTATAGATCTTTTAGAGAGCACTACAGTTGCAACAACAAAACTCAAAAGCCGTGAAACTACTATTCCAGAGATTAAATATGGCAGTGGCATATATACATTTAGCTTGAAATGGAATGAGATAAAAACACTGACTCCCTCAATATTGAACCCTTACGAGAAATACACATTGTACCGGAATCCAAAATTCAAAAATCAAGGGAAATTTTTAACCTTGTCTGATTTTTTGTCCTTGACTAATGGGACTCGCGTCTTGATCAGCATAGAGAATGCTGCCTACCTTGCAGAGAAGAGGAATTTAAGCGTGACCAATGCAGTCCTTGATGCTTTACATAAAGCAGGTTATCATAAGCCAGGATCCCCTAAAGTTATGATTCAATCAACTCATAGCTCTGTACTTAAGATATTCAAGGATAAATCTAAATATGAGAGGGTTTACAAGGTTGATGAGAATATTCGTGATGCTGTTGATTCAGCTATTGAGGATATCAAAACATTTGCTGATTCTGTGGTGGTGAGAAAGGCATCTGTTTTTCCTGAAACTTCAGCCTTTCTAGTTAACTCTACAAACACTGTAGCAAGGTTACAATCATTTAACCTCTCAGTTTATGTAGAAACTTTCAGCAATGAATTTGTATCTCAAGCATGGGACTACTACTCAGATGCTTTTGTTGAGATAAATTCTTTTGTCCTTGGAGCCAAGGTTAATGGCATTATTACTGACTTCCCTAAGACAGCTGACAGATACAGGAAGAACAAGTGTTTAAAGCATGGCAAGAAAGTATCTTATATGAGCCCTGTTGAACCTGGCAAACTTTTGAAACAAGTTACTAAGCCATACCTTCCACCACCTGCACCCCCACTCCCAGTCTTGAATGATAGTAATGTGACAGAGGCACCTTTGCCTGGTGTTTCTGGAAAAGTCCCAATTCCTAGTGCTGCTCCAGGAATAGCAGCAGCCCCCATCACTGCATAA 2199 0.4011 MWQFMALPCELALLILQYSLLVALVSSSGPGTGWKTLQGSPPLVIARGGFSGIFPDSSLPSYSLALNTSGPNVTLWCDVQLTKDGVGICFPELKLDNATDISIAYPGKAKDYSVNGVPTRGWFSVDYNSSQLVNVSLVQGVYSRTNKFDGSKYHILTVEDVAKLVKSPSTGMWLNVQHDTFYKQQNLSVENFLRSLSTKRVSVNYISSPDADFLKRVRSNFSPRTTSLIFRFLEQYKIEPATKQTYGALLKNLTFIRTFASGILVPKGYIWPVDSDLYLQPHTSLVSDAHKQGLQVFVSELVNDVPFSYNFSYDPQAECLSFIDNNAFSVDGVLSDFPVTPSAAINCFSGLRENAKKQVETLVITKYGASGDYPACTDLAYKQAKSDGADVLDCPVQMSSDGIPFCLSSIDLLESTTVATTKLKSRETTIPEIKYGSGIYTFSLKWNEIKTLTPSILNPYEKYTLYRNPKFKNQGKFLTLSDFLSLTNGTRVLISIENAAYLAEKRNLSVTNAVLDALHKAGYHKPGSPKVMIQSTHSSVLKIFKDKSKYERVYKVDENIRDAVDSAIEDIKTFADSVVVRKASVFPETSAFLVNSTNTVARLQSFNLSVYVETFSNEFVSQAWDYYSDAFVEINSFVLGAKVNGIITDFPKTADRYRKNKCLKHGKKVSYMSPVEPGKLLKQVTKPYLPPPAPPLPVLNDSNVTEAPLPGVSGKVPIPSAAPGIAAAPITA. 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02982 732 CDD GDPD_SHV3_repeat_1 42 344 - -
Seca6g02982 732 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 40 344 - -
Seca6g02982 732 Pfam Glycerophosphoryl diester phosphodiesterase family 368 653 IPR030395 GO:0006629|GO:0008081
Seca6g02982 732 Pfam Glycerophosphoryl diester phosphodiesterase family 49 338 IPR030395 GO:0006629|GO:0008081
Seca6g02982 732 Gene3D Phosphatidylinositol (PI) phosphodiesterase 41 344 IPR017946 GO:0006629|GO:0008081
Seca6g02982 732 Gene3D Phosphatidylinositol (PI) phosphodiesterase 360 657 IPR017946 GO:0006629|GO:0008081
Seca6g02982 732 SUPERFAMILY PLC-like phosphodiesterases 362 658 IPR017946 GO:0006629|GO:0008081
Seca6g02982 732 SUPERFAMILY PLC-like phosphodiesterases 41 344 IPR017946 GO:0006629|GO:0008081
Seca6g02982 732 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 18 715 - -
Seca6g02982 732 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 359 658 - -
Seca6g02982 732 CDD GDPD_SHV3_repeat_2 362 657 - -
Seca6g02982 732 ProSiteProfiles GP-PDE domain profile. 361 658 IPR030395 GO:0006629|GO:0008081
Seca6g02982 732 ProSiteProfiles GP-PDE domain profile. 42 345 IPR030395 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02982 Seca-Chr6 95821979 95828665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02982 7 724 Receptor kinase-like Gene Family AT4G26690 55.956 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02982 - - gmx:100813869 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02982 6 95821979 95828665 Seca6g02982 6 95821979 95828665 ECH
Seca6g02982 6 95821979 95828665 Seca6g02981 6 95803338 95813010 PCT