Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02247 ATGGCAGAAGCAGATTGCAGTAACAGAGGACCAAGATGGTCTCTCAATGGAATGACAGCACTTGTCACTGGTGGCACACGTGGAATTGGGCATGCCATAGTGAATGATCTAGCTTCGTTTGGCGCTGCTGTACACACTTGTTCCAGGACCGAATCAGAGCTCAACAAGTGCTTGCAAGAATGGCAAAGTCAGGGCTTTTTGGTTACTGGGTTTGTCTGTGATGTGTCCTCTCGACCCCAAAGAGAGAAGCTTATTCAGGAAGTGGCATCTACCTTCAATGGCAAGCTCAACATCTATGTAAACAATGTCGGAACAAACTTTAGAAAGCCAACCGTTGAGTACACTGCTGAAGAATATTCACATCTAATGACAGTTAATTTAGACTCTGCATTCCATCTGTGCCAACTTGCACATCCTCTTCTAAAAGCATCTGGAAGGGGAAGCATTGTGTTCATTTCATCTGTTGCAGGTGTGGTGAGCTTGGGGACTGGATCTGTATATGCAGCAAGTAAAGCTGCAATAAATCAGCTTACAAAAAATCTGGCTTGTGAATGGGCAAAAGACAACATAAGGAGCAATTGTGTTGTTCCATGGGCAACCAGAACCCCACTTGTAGAACATTTGTTTCAAAACCCAAAGTTTGTGGATGATATTTTGTCTCGAACTCCTCTTAAGCGCATTGCAGAACCTGAAGAAGTGTCATCCTTGGTGACTTACCTTTGCTTGCCTGCTGCTTCTTACATCATTGGACAGGTTATTTGTGTTGATGGAGGATTAACAGTAACCTCAAGATGGTCCCTCTATGGAATGACTGCTCTCGTCACCGGTGGAACTCGTGGGATTGGGCATGCCATAGTCGAGGACTTATGTGGGTTTGGTGCCACCGTCCACACTTGTTCCAGAAACCAAGAAGAGCTTAATAAGTGCTTGGATGAATGGCGGAAAAAGGGCTTTTTGGTTTCTGGGTCGGTGTGTGATGTGTCATCTCAAGCCCACAGAGAGAAGCTCATTCAGGAAGTTACCTCCATCTTCAATGGCAAGCTTAACATTTATGTGAATAATGTTGGAGCAAACTTTAGGAAGCCAACCATTGAGTACTCTGCTGAAGACTATTCACAAATGATGGCAATCAATTTAGACTCTGCATATCATCTGTGCCAACTTACACATCCTCTTCTAAAAGCATCTGGAATGGGAAGTATTGTATTCATTTCATCCATTGCTGGTGTGGTGAGCTTAGGTACTGGATCAGTCTATGCAGCAAGTAAAGCTGCAGTCAATCAGCTTACGAAAAATCTGGCTTGTGAATGGGCGAAAGACAACATAAGGAGCAATTGTGTTGTTCCTGCTACCACCAATACACCACTTGTAGAACATCTGCTTCGCAACAAGAAGTATGTTGATGAAATGCTGTCTCGAACTCCTCTTGGGCGTATTGCAGAAGCTCAAGAAATTTCATCCTTGGTGGCTTTCCTTTGTCTGCCTGCTGCCTCTTACATCACAGGACAGGTTGTTTGTGTTGATGGAGGATTGGCAGTGAATGGATTTCAGCCCAGCATGAGAATAACATAA 1572 0.4415 MAEADCSNRGPRWSLNGMTALVTGGTRGIGHAIVNDLASFGAAVHTCSRTESELNKCLQEWQSQGFLVTGFVCDVSSRPQREKLIQEVASTFNGKLNIYVNNVGTNFRKPTVEYTAEEYSHLMTVNLDSAFHLCQLAHPLLKASGRGSIVFISSVAGVVSLGTGSVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWATRTPLVEHLFQNPKFVDDILSRTPLKRIAEPEEVSSLVTYLCLPAASYIIGQVICVDGGLTVTSRWSLYGMTALVTGGTRGIGHAIVEDLCGFGATVHTCSRNQEELNKCLDEWRKKGFLVSGSVCDVSSQAHREKLIQEVTSIFNGKLNIYVNNVGANFRKPTIEYSAEDYSQMMAINLDSAYHLCQLTHPLLKASGMGSIVFISSIAGVVSLGTGSVYAASKAAVNQLTKNLACEWAKDNIRSNCVVPATTNTPLVEHLLRNKKYVDEMLSRTPLGRIAEAQEISSLVAFLCLPAASYITGQVVCVDGGLAVNGFQPSMRIT. 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02247 523 FunFam Short-chain dehydrogenase reductase 264 515 - -
Seca6g02247 523 PRINTS Glucose/ribitol dehydrogenase family signature 271 288 IPR002347 -
Seca6g02247 523 PRINTS Glucose/ribitol dehydrogenase family signature 346 357 IPR002347 -
Seca6g02247 523 PRINTS Glucose/ribitol dehydrogenase family signature 419 438 IPR002347 -
Seca6g02247 523 PRINTS Glucose/ribitol dehydrogenase family signature 440 457 IPR002347 -
Seca6g02247 523 PRINTS Glucose/ribitol dehydrogenase family signature 393 409 IPR002347 -
Seca6g02247 523 PRINTS Glucose/ribitol dehydrogenase family signature 475 495 IPR002347 -
Seca6g02247 523 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 406 434 IPR020904 GO:0016491
Seca6g02247 523 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 270 513 IPR036291 -
Seca6g02247 523 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Seca6g02247 523 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 419 438 IPR002347 -
Seca6g02247 523 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Seca6g02247 523 Gene3D - 9 261 - -
Seca6g02247 523 Gene3D - 262 515 - -
Seca6g02247 523 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 261 IPR036291 -
Seca6g02247 523 PANTHER TROPINONE REDUCTASE 12 262 IPR045000 GO:0016491
Seca6g02247 523 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Seca6g02247 523 FunFam Short-chain dehydrogenase reductase 4 263 - -
Seca6g02247 523 Pfam Enoyl-(Acyl carrier protein) reductase 278 511 - -
Seca6g02247 523 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02247 Seca-Chr6 83410189 83421860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02247 264 518 Miscellaneous Gene Families AT2G29290 62.646 1.70e-115 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02247 K08081 - vvi:100265103 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02247 6 83410189 83421860 Seca6g02256 6 83559658 83563949 ECH
Seca6g02247 6 83410189 83421860 Seca6g02247 6 83410189 83421860 ECH