Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02189 ATGGATGCTTTAGCTAAGAAGACCGAAAATTCTCAAAAGAAAAGAGATGGGTCTCGGTCTTGTCTCACTGATTCGAGTGCAGAGTCTAGAGAAACCAGTTTCAGTGGGTCGAGCTCCTCAGTTTCTACTGAAGAAGCAAAAGCAAAAGGGTCTTCTTCTCCTGCTCCTCTTGGTTGGCCTATTCTCAAGGCTGCAGTCTCCAAGCGCTCAAATTCTGATGAAAAGGAAAATAAACATAATTCCCATTTGGAAGACACAAAATTTACCGGTATCAATTTCAAAATGTCAGATGCTGACATGATGAAGGAAAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCAAATGCCATTACTAATCTGTGTGCCACTGTTTTTGGGCAATTATGGAGACTAGAACCTCTACCTTCTGAGAAGAAAGAAATGTGGCGGAGAGAGATGGAATGGCTTGTTAGTGTTAGTGATCACATTGTTGAGTTAATACCTTCTTGGCAAACATTCCTGATGGAAGTAATGACTTGTAGGCCCAGGACAGATATTTTTATCAATCTTCCAGCACTTCGTAAACTTGACAACATGCTTCTCGAAATTTTAGACAGTTTCTCTGCTACAGAGTTTTGGTATGTTGACCAAGGAATAGTAGCCCCAGATGCAGACGGTTCTGCCTCTTTCCGCAAAACGATTCAGAGGCAAGAAGAGAAGTGGTGGCTCCCTGTACCTCGTGTTCCCCCTGAGGGTCTCAGTGAGAACTCAAGAAAACAGTTGAATCACTCTAGAGAATGTGCAAACCAAATTCTAAAAGCAGCCATGGCTATCAACAGCATTGCTTTGGCTGAAATGGAAGTCCCAGAGTCATATTTGGAAGCCCTCCCTAAGAATGGAAGAACTTGTTTGGGGGATTTTATATACCGTTACATTACATCAGATCAATTCTCCCCAGAGTGCCTGCTTGATTGTTTAGACCTCTCATCTGAACATGTTGCACTAGAGATTGCTAACCGTGTGGAAGCTGCAATTTATGTGTGGCGTAGAAGAGCTCATCCCAGGTCCTCACCTAATCCCAACCGTTCAACTACAAAGTCATCCTGGGAGATAGTCAAGGACTTCATGGATGTTGGAAAATCTGTTCTGGAGAGCTACTCTAGAGTTTTGGAGAGCATGGCTTTTAACATTGTATCCCGTATTGATGATTTGCTATATGTGGATGACCTAACTAAACATTCAGACAAACTTGCATTGGTTCCAACTACAGTTAACGTAGTTTCTCAGCAGAAGGTCTCACGTCCATACTCAGTGTCTGTCTCAGGCACTCCACACAAAGCAGCAATTGGTACACCTAGCTTTTCACCTAAGCCACTCATTAGTCCTGCAAGAGGGGAGAGAACTCCTTTCCTCAACAACAACAACAATATCAAACCTCATCGTCGAGGCTTTGGGGTGAGAAGAGTGTTGTCGAATTATCTTGGAGTAGAGACAAAAACAAAGATATGTAGTAATTCAAGTTCAACTGAGGTGAATTGTTCAAACCAGAATAGCAAGAAAACAGAACACCCAGAACAACGTCAGAAGGAATCATGCGCTGTGAAAAAACAAGACAAAATAACGAGCAAGGTTATCCATTGA 1662 0.4248 MDALAKKTENSQKKRDGSRSCLTDSSAESRETSFSGSSSSVSTEEAKAKGSSSPAPLGWPILKAAVSKRSNSDEKENKHNSHLEDTKFTGINFKMSDADMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPLPSEKKEMWRREMEWLVSVSDHIVELIPSWQTFLMEVMTCRPRTDIFINLPALRKLDNMLLEILDSFSATEFWYVDQGIVAPDADGSASFRKTIQRQEEKWWLPVPRVPPEGLSENSRKQLNHSRECANQILKAAMAINSIALAEMEVPESYLEALPKNGRTCLGDFIYRYITSDQFSPECLLDCLDLSSEHVALEIANRVEAAIYVWRRRAHPRSSPNPNRSTTKSSWEIVKDFMDVGKSVLESYSRVLESMAFNIVSRIDDLLYVDDLTKHSDKLALVPTTVNVVSQQKVSRPYSVSVSGTPHKAAIGTPSFSPKPLISPARGERTPFLNNNNNIKPHRRGFGVRRVLSNYLGVETKTKICSNSSSTEVNCSNQNSKKTEHPEQRQKESCAVKKQDKITSKVIH. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02189 553 MobiDBLite consensus disorder prediction 512 526 - -
Seca6g02189 553 MobiDBLite consensus disorder prediction 512 553 - -
Seca6g02189 553 MobiDBLite consensus disorder prediction 22 49 - -
Seca6g02189 553 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 384 478 IPR038937 GO:0005085
Seca6g02189 553 ProSiteProfiles PRONE domain profile. 88 425 IPR005512 GO:0005085
Seca6g02189 553 Gene3D PRONE domain, subdomain 1 336 425 - -
Seca6g02189 553 MobiDBLite consensus disorder prediction 527 553 - -
Seca6g02189 553 Gene3D PRONE domain, subdomain 1 92 328 - -
Seca6g02189 553 MobiDBLite consensus disorder prediction 1 21 - -
Seca6g02189 553 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 96 383 IPR005512 GO:0005085
Seca6g02189 553 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 384 419 IPR005512 GO:0005085
Seca6g02189 553 FunFam Rop guanine nucleotide exchange factor 1 90 325 - -
Seca6g02189 553 MobiDBLite consensus disorder prediction 1 57 - -
Seca6g02189 553 MobiDBLite consensus disorder prediction 444 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02189 Seca-Chr6 82588354 82592166 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02189 - - gmx:100796692 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00983 8 13528723 13532704 Seca6g02189 6 82588354 82592166 ECH
Seca6g02189 6 82588354 82592166 Seca6g02189 6 82588354 82592166 ECH
Seca8g00983 8 13528723 13532704 Seca6g02189 6 82588354 82592166 PCT