Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02011 ATGGTTTCAGTTGGTAATGGTATTGGGAATAATAATCCCAAAGATGAAATTGAAGAAATTAATGGGAGTCAAGAGAAGGAGTTTGCTTCTATAGACATTTCAACTTCTCAAAAAACATTTCTCAACACTGAAAATCCTCAGAGGAACTCCTTGAGTTCTCTTCCTGATAGGATAAAGTTCAAAACATTTGGTTCTGCATCTGCCAAATTCAAGCAGGTTGCTAATGTGAAAGACCAGATTTCACAATCTGTGGATCCTCCTCGTTCAAATAGCCTAAGATCACGTTTCAATAGCATGTTTGCAAGGAAGCTTGAGTGGGGTTCAGTCAAGAAGATGTGCATGGAATGGATTAGAAACCCAATGAACATGGCACTTTTTGTGTGGATCACCTGTGTTGCTGTTTCTGGTGCAATTCTGTTCCTTGTCATGACAGGCATGTTGAATAATGTGCTACCAAGTAAGTCTGAGAGGAATAAATGGTTTGAAGTAAATAACCAAATACTCAATGCACTGTTTACACTTATGTGTTTGTATCAACACCCAAAGAGATTCTACCACCTTGTTCTTCTTTGCAGATGGAGACCAAATGATATCTCTAGACTTAGGAAGTTATATTGCAAGAATGGCACTTTTAAGCCACATGAATGGTCACATATGATGGTAGTGGTCATTCTCCTTCATGTGAACTGTTTTTCTCAATATGCACTTTGTGGTCTAAACTTGGGGTATAAAAGATCTGAGAGACCTGCCATTGGAGTTGGAATATGTATATCTTTTTCAATTGCTACACCTGCTATTGCTGGCCTGTACACTTTTCTTAGCCCCCTTGGGAAGGACTATGATTGTGAGATGGATGAAGAAGCACAGGTTCAAATCACTGCTTCCCAAAGACAAGAGCAGCTGAGAGAGAAGCCACTTGAGAAGAAATATGTATTTGCATCCAAAGATCAACAGAAAATCATTGAAAATAGACCAAAGTGGAGTGGAGGAATACTTGACATTTGGAATGACATTTCTTTAGCATATCTCTCACTTTTCTGCACTTTCTGTGTCTTTGGGTGGAACATGGAGAGACTTGGCTTTGGAAACATGTATGTTCATATTGCTACTTTTGTGCTGTTTTGTGTGGCTCCTTTCTGGATTTTTATATTGGCTTCGGTTAATATTGATGATGACAATGTTAGACAGGCTCTTGTAGCTGTTGGGATTATTCTTTGTTTCTTTGGTTTACTGTATGGTGGCTTTTGGAGGATCCAAATGAGAAAGAGGTTCAATTTACCTGCCTATGACTTCTGTTTTGGAAAACCTTCAGTTTCTGATTGCACACTTTGGCTATGTTGTTGCTGGTGCTCTCTTGCTCAAGAAGCACGAACTGGGAATAACTATGATCTTGTGGAAGATACATTCTGCAGGAAAGAAATTGATACTGGGGATCAACAATCAATGTCACCTTTGGCTCGGGAAGATGTAGTATCAACCAAATCTAGCACAAGTTCTCCTCTGGGTCACAGCTCCTCCCCTGACATGATAAAAACATCTAGTCCTCTAAGTTCAAGTAATGCCTTAAAGAGAGATTATAGTCTAGATAGGCCTCTATCTACTGTAGAAGAAGACCATTTTGAAAGAGGTAAAGATGGAATAATGAACCCACCTACTCCATCATTAATACAAAGAGAAGCTCCTTAG 1686 0.3921 MVSVGNGIGNNNPKDEIEEINGSQEKEFASIDISTSQKTFLNTENPQRNSLSSLPDRIKFKTFGSASAKFKQVANVKDQISQSVDPPRSNSLRSRFNSMFARKLEWGSVKKMCMEWIRNPMNMALFVWITCVAVSGAILFLVMTGMLNNVLPSKSERNKWFEVNNQILNALFTLMCLYQHPKRFYHLVLLCRWRPNDISRLRKLYCKNGTFKPHEWSHMMVVVILLHVNCFSQYALCGLNLGYKRSERPAIGVGICISFSIATPAIAGLYTFLSPLGKDYDCEMDEEAQVQITASQRQEQLREKPLEKKYVFASKDQQKIIENRPKWSGGILDIWNDISLAYLSLFCTFCVFGWNMERLGFGNMYVHIATFVLFCVAPFWIFILASVNIDDDNVRQALVAVGIILCFFGLLYGGFWRIQMRKRFNLPAYDFCFGKPSVSDCTLWLCCCWCSLAQEARTGNNYDLVEDTFCRKEIDTGDQQSMSPLAREDVVSTKSSTSSPLGHSSSPDMIKTSSPLSSSNALKRDYSLDRPLSTVEEDHFERGKDGIMNPPTPSLIQREAP. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02011 561 PANTHER PLAC8 FAMILY PROTEIN-RELATED 12 559 - -
Seca6g02011 561 Pfam PLAC8 family 327 457 IPR006461 -
Seca6g02011 561 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g02011 561 MobiDBLite consensus disorder prediction 480 561 - -
Seca6g02011 561 Pfam Protein of unknown function (DUF2985) 115 193 IPR021369 -
Seca6g02011 561 MobiDBLite consensus disorder prediction 480 524 - -
Seca6g02011 561 MobiDBLite consensus disorder prediction 529 545 - -
Seca6g02011 561 NCBIfam uncharacterized Cys-rich domain 326 458 IPR006461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02011 Seca-Chr6 79223467 79226559 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02011 - - gmx:100811964 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00830 8 11026093 11027778 Seca6g02011 6 79223467 79226559 ECH
Seca6g02011 6 79223467 79226559 Seca6g02011 6 79223467 79226559 ECH
Seca8g00830 8 11026093 11027778 Seca6g02011 6 79223467 79226559 PCT