Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01837 ATGGCGGAGCTCCGGCATTCGTCATCACTCGGCAGCCGAGCCACTTCTTCTCCGATGAAGCGCGACGGCGTCGGCGATTCCTCCCCTCTCATTCCCGACAACGACCTCCCCGACGATCGCCACGCTTCCAAGGACCGCGACCGTCCCCTATGCTCCCATTTCTATCACCTCTGCTCCGACGAGCCTAGGGTTCCTCCTCCCAACTCCAGGATCTCTCTATTTTTCACCCTCCTTCTACTTCTCGTCGCCTTACTCTCCATTTTCACAATAATCACTAAATTGAATGCCCCTTACTTGTGTAAAAAAGATGGGATTGTTCTTCACTGCCCACACGTTAAAGAATCGCCATCTCTTTGGGAAAATCCTTTCTCATCCACCACATCTTGGAAGCCTTGTGCGGAGCGCCGGGATGGTGTTATATCAGAACTTCCTCCTGAAAATAAAACAAATGGCTATATATTCATTCATGCTGAAGGTGGTCTAAATCAGCAAAGAATTGCGATATGCAATGCAGTGGCTGTGGCAAAAATAATGAATGCCACACTTATTTTGCCCGTTTTGAAGCAGGACCAGATTTGGAAAGACCAAACGAAATTTGAAGACATTTTTGATGTGGACCACTTCATTGACTACCTAAAGTATGATGTCCGTATTGTCCGGGATATCCCAGAATGGTTTACTGATAAAGCAGAGCTATTTTCTAGTATAAGACGGACTGTAAAAAACATTCCAAAATATGCACCTGCACAATTTTACATTGACAATGTCCTTCCCCGAATCAAGGAGAAGAAGATTATGGCTCTCAAACCTTTTGTTGATAGGCTGGGATATGATAATGTTCCTCCAGAAATCAACAAGTTGAGATGTAGGGTTAATTATCATGCTCTGAAATTTCTTCCTGATATAGAGCAAATGGCTGATTTGCTAGCATCAAGGATGAGAAACCGAACAGGCAGTTCAAATCCTTATATGGCTCTGCATCTTAGATTTGAAAAGGGAATGGTGGGCCTATCATTCTGTGATTTTGTGGGGACAAGAGAGGAGAAAGCTAAAATGGCAGAGTATAGAAAAAAGGAGTGGCCACGAAGATACAAGAATGGTTCCCACCTTTGGCAATTGGCTCTGCAGAAGCGAAAGGAAGGACGATGTCCTCTAGAGCCTGGAGAAGTGGCTGTTATACTTCGGGCTATGGGCTATCCAAAGGAAACTCAAATTTATGTAGCTTCTGGACAAGTGTATGGTGGACAGAACCGGATGGCTCCCCTGAGGAATATGTTCCCTAATTTGGTTACAAAAGAGGAGTTGGCAACAAAAGAGGAATTAGATGGTTTCAGAAAGCATGTGACGAGCCTTGCAGCTCTTGACTTCTTGGTGTGCTTGAAGTCAGATGTATTCGTGATGACCCACGGAGGCAACTTTGCTAAGCTTATCATTGGGGCCCGTAGGTACATGGGTCACCGTCTAAAATCAATTAAGCCTGACAAAGGACTAATGTCCAAATCTTTTGGAGATCCATACATGGGTTGGGCTCCTTTTGTAGAAGATGTTGTTGTTACTCACCAGACACGTACGGGATTGCCAGAAGAGACTTTCCCTAACTATGACCTCTGGGAGAACCCTCTGACTCCTTGCATTGTGTCATCTAAACATGTATCTCAGAGTGACCTACAACTAGCTAGCATCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACAATTTCTGAACAAGAATTCCTACAGAGTGCTGGAATAGTTTCTGAGCGTCTCCATGATCATGGATATGAGTATGTTGTGGTGGATTATCTCTGGTATAGAAGGAAAGTCAAGGGTGCTCATCATGATTCTCTTGGATTTGATGTGATTGATGAATGGGGTAGGATGATTCCTGACCCAGGAAGGTGGCCTTCTTCCAAAGATGGGAAAGGGTTCAGTGAAGTAGCTAATCGAGTACACAGCCTGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATTCTTGATACAACAACGGGAGCTGCATATCAAGAATCTGGTCGTGTGTGGCGTGCAAAAGACATAGCAATGCCACAAAGGGCTTGCGCATGGATGCCTCATGGTTTCATGAGTGTAAATACGGAGTTGGGAGCTGGGAAAGCTTTTTTGAGGTCTCTTTATGAGCAATATGCTGCATGGGGTGTTGATTTTGTCAAACATGACTGTGTATTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTATCAGAGGTTCTCAGGAAGCTTGATCGACCCGTTGTATATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAACAGGAGATGACTGGGATACTTGGTGGGATGTCAAAGCTCATTTTGATGTAACAAGGGATTTTTCAACTGCTAGTTTGATAGGAGCAGAAAGTTTAATGGGGAACTCCTGGCCGGATTTAGACATGCTACCATTTGGATGGCTAACTGATCCCGGTTCAAATGAAGGTCCACATAGGTATAGTAGACTCAACCTAGAAGAGAAGAGGACACAGATGACCCTGTGGTCTATGGCAAAGTCTCCCCTTATGTATGGGGGCGATGTACGAAAGATTGATCCTGACACATATGATCTTATTACAAATCCTACGCTTCTGGAGATTAATTCTTTCAGCTCAAATAATATGGAGTTTCCTTATGTCACAAGCCTGAAGAGTGAAGATCAGGATTATGGAAGGCAAATGAGAAGAAGCAGCAAAGAAATGAAAACATCATATACACATTCATTAGGCCTTACTAGATGCTCTGAGTCAAAAGCAAGCGGTTGGACTAGTGAAATTCTTAACCAATATCTTGAAAGAATCTGTTGGAAAAGGAGTTTAAGAAACAATCATCTTTCCCCCTTCTGTGTGCTCAAGAGAGAACTAGATGAAGGGAGTATGTATCAAGACGACCATCAAAGGAAACATCATTTAGTTGCAGCCAACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGAAAGCTTACTTCTAAAGAGGCCAAGAGAGGTACATTTTCCCCGTGCAGGTGGGATTCAAATCAGATGTGGGAGTTGAATCCTAATGGAACCCTGGCAAATAGTTACTCTGGCTTATGTGCAACAGTAGAGTCTATCGAAGCTACCGTTAATGCTGGTGGTTTTCGCTCTTGGATCGCAACAGGAAGATCAGGAGAAGTCTATGTTGCTTTCTTCAATCTAAGTGAACAGAAGATGGTGATATCTGCGCAGACATCAGACCTGGCTAAGGTTCTTCCTGGCAGAGACTTCAGTTCTTGTAAGGGAAATGAAGTGTGGAGTGGAAGTGACATAGTAATAACACAGGGGACCTTATCAACAGCAGTGGAAATGCATGGAAGTGCACTATTCGTTCTCAATTGCAATTAG 3483 0.4376 MAELRHSSSLGSRATSSPMKRDGVGDSSPLIPDNDLPDDRHASKDRDRPLCSHFYHLCSDEPRVPPPNSRISLFFTLLLLLVALLSIFTIITKLNAPYLCKKDGIVLHCPHVKESPSLWENPFSSTTSWKPCAERRDGVISELPPENKTNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKYDVRIVRDIPEWFTDKAELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINKLRCRVNYHALKFLPDIEQMADLLASRMRNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSFGDPYMGWAPFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCIVSSKHVSQSDLQLASIPPRGWNSYDSFCWTISEQEFLQSAGIVSERLHDHGYEYVVVDYLWYRRKVKGAHHDSLGFDVIDEWGRMIPDPGRWPSSKDGKGFSEVANRVHSLGLKFGIHVMRGISTQAVNANTPILDTTTGAAYQESGRVWRAKDIAMPQRACAWMPHGFMSVNTELGAGKAFLRSLYEQYAAWGVDFVKHDCVFGDDLDLNEISYVSEVLRKLDRPVVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDTWWDVKAHFDVTRDFSTASLIGAESLMGNSWPDLDMLPFGWLTDPGSNEGPHRYSRLNLEEKRTQMTLWSMAKSPLMYGGDVRKIDPDTYDLITNPTLLEINSFSSNNMEFPYVTSLKSEDQDYGRQMRRSSKEMKTSYTHSLGLTRCSESKASGWTSEILNQYLERICWKRSLRNNHLSPFCVLKRELDEGSMYQDDHQRKHHLVAANRIKFCLDASPKRKLTSKEAKRGTFSPCRWDSNQMWELNPNGTLANSYSGLCATVESIEATVNAGGFRSWIATGRSGEVYVAFFNLSEQKMVISAQTSDLAKVLPGRDFSSCKGNEVWSGSDIVITQGTLSTAVEMHGSALFVLNCN. 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01837 1160 Gene3D - 293 491 - -
Seca6g01837 1160 PRINTS Glycosyl hydrolase family 27 signature 650 671 IPR002241 GO:0004553|GO:0005975
Seca6g01837 1160 PRINTS Glycosyl hydrolase family 27 signature 556 575 IPR002241 GO:0004553|GO:0005975
Seca6g01837 1160 PRINTS Glycosyl hydrolase family 27 signature 865 886 IPR002241 GO:0004553|GO:0005975
Seca6g01837 1160 MobiDBLite consensus disorder prediction 1 44 - -
Seca6g01837 1160 SUPERFAMILY (Trans)glycosidases 557 907 IPR017853 -
Seca6g01837 1160 Pfam GDP-fucose protein O-fucosyltransferase 152 484 IPR019378 -
Seca6g01837 1160 SUPERFAMILY Glycosyl hydrolase domain 1076 1158 - -
Seca6g01837 1160 SUPERFAMILY Ricin B-like lectins 1017 1071 IPR035992 -
Seca6g01837 1160 CDD O-FucT_plant 152 487 IPR024709 -
Seca6g01837 1160 Gene3D Aldolase class I 552 910 IPR013785 -
Seca6g01837 1160 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 94 546 - -
Seca6g01837 1160 Pfam Alpha galactosidase C-terminal beta sandwich domain 1079 1157 IPR041233 -
Seca6g01837 1160 CDD GH27 562 907 IPR002241 GO:0004553|GO:0005975
Seca6g01837 1160 Gene3D - 1073 1159 IPR013780 -
Seca6g01837 1160 Pfam Alpha galactosidase A 733 907 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01837 Seca-Chr6 75042341 75056203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01837 552 993 Glycoside Hydrolase AT3G26380 67.494 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01837 - - gmx:100777954 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06088 12 152735606 152741909 Seca6g01837 6 75042341 75056203 PCT