Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06088 ATGAAGTGTTTCACTGTGTCCTTAGTCTCTTTCTGGGTTCTCCTTAGTCTCTGTTTTCCGAGTGTGTCATCTCGAAATATATCTGAGAGTGACCTACAGCAAGCTAGCTTCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGTTGGACAATTTCTGAAGAAGAATTCTTACAGAGTGCTGAAATAGTTTCTCAACGTCTCCATGCTCATGGATATCAGTATGTTGTCGTGGATTATCTTTGGTATAGGAAGAAAGTCAAGGGGGCATATCCTGATTCTCTTGGATTCGATGTCATTGATGAATGGGGAAGGATGATCCCTGACCCAGGAAGATGGCCTTCTTCCAATGGTGGGAAAGGGTTCAGTGAAGTAGCTAATAAAGTACATAGCTTGGGTTTAAAGTTTGGAATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAATACCCCAATCCTAGATACAACAAAGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGCGTGCAAAAGACATAGCGATCCCGGAAAGGGCTTGTGCATGGATGCCTCACGGTTTCATGAGTGTAAATACGAAGTTGGGAGCAGGGAGAGCTTTTTTGAGATCCCTTTATGAGCAGTATGCTTCTTGGGGTGTTGATTTTGTGAAACATGACTGTGTATTTGGTGATGACTTGGATTTAAATGAAATAACCTATGTATCAGAGGTTCTCAGCAAGCTTAATCGCCCCATTGTGTATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTTAGTGGACTAGTCAACATGTATCGTATAACAGGAGATGACTGGGATACATGGGGGGATGTCAAGGCTCATTTTGATGTAACAAGGGATTTTTCTACAGCTAATATGATAGGAGCAAAAGGTTTAAAGGGGAACTCCTGGCCTGATTTGGATATGCTACCATTTGGATGGCTAACTGATGCAGGTTCAAATGAAGGTCCACACAGGTATAGTAGACTCAATCTAGAAGAGAAAAGGACACAGATGACTTTGTGGGCTTTGGCAAAGTCTCCCCTTATGTATGGGGGGGATGTGCGGAAGATTGATCCTACCACATATGAACTTATCACGAATCCTACCCTCCTAGAGATTAATTTTTTCAGCTCAAATAATATGGAGTTTCCTTATGTCATGAGCTCAATGAACTTGAAGCGTGAACATCAGCATCATGGAGGGAAAACAAGAGGATCTAAGAAAGGAAGGAAAACATCATATACACACTCATTAGGCCTCACTGGATGCACTGAATCAAAGGCGAGTGGTTGGATTATTGAAAGTCTTAACCAAGATCTTGAAAGAATCTGTTGGAAAAGGAGTCTAGAAAACAAGCATCAGACCCCTTTCTGCGTACACAAGAGAGAACTTTGGTTCAGATTAGATGGGGAGAGTATGTATCCAGAGGACTATCAAGGGAAACATCAATTAGTTGCAACTGACAGAATGAAATTTTGCTTGGATGCTTCTCCCAAAAGAAAAGTTACTTCTAAAGAGTTCAAGAGAGGTACATTCTCTCCTTGCAGATGGGATTCAAATCAGATCTGGGAGTTCAACTCCAATGGGACACTGGTAAATAGTTACTCCGGTCTTTGTGCAACAGTAGAGTATGTGGAAGCTGATGTTAATTCGGGTGGGATTCGCTCTTGGATTGCAACGGGAAGAAAAGGGGAAATCTATATGGCTTTCTTCAATCTAAGTGAACAGAAGACGGCGATTTATGCAAAGACATCATATCTAGCTAAGGTTTTTCCTGACAGACGCATCAATTCGTGTCAGGGCAAGGAAGTGTGGAGTGGGAAGGACGTTATCACAACGCAGGGGACGATATCAATCGACGTGGAAACTCATGGATGTGCATTATTTGTTCTAAATTGCGACTAG 1932 0.4249 MKCFTVSLVSFWVLLSLCFPSVSSRNISESDLQQASFPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLHAHGYQYVVVDYLWYRKKVKGAYPDSLGFDVIDEWGRMIPDPGRWPSSNGGKGFSEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGGAYQESGRVWRAKDIAIPERACAWMPHGFMSVNTKLGAGRAFLRSLYEQYASWGVDFVKHDCVFGDDLDLNEITYVSEVLSKLNRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDTWGDVKAHFDVTRDFSTANMIGAKGLKGNSWPDLDMLPFGWLTDAGSNEGPHRYSRLNLEEKRTQMTLWALAKSPLMYGGDVRKIDPTTYELITNPTLLEINFFSSNNMEFPYVMSSMNLKREHQHHGGKTRGSKKGRKTSYTHSLGLTGCTESKASGWIIESLNQDLERICWKRSLENKHQTPFCVHKRELWFRLDGESMYPEDYQGKHQLVATDRMKFCLDASPKRKVTSKEFKRGTFSPCRWDSNQIWEFNSNGTLVNSYSGLCATVEYVEADVNSGGIRSWIATGRKGEIYMAFFNLSEQKTAIYAKTSYLAKVFPDRRINSCQGKEVWSGKDVITTQGTISIDVETHGCALFVLNCD. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06088 643 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 10 642 IPR002241 GO:0004553|GO:0005975
Seca12g06088 643 SUPERFAMILY (Trans)glycosidases 35 383 IPR017853 -
Seca12g06088 643 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Seca12g06088 643 CDD RICIN 481 551 IPR000772 -
Seca12g06088 643 Pfam Alpha galactosidase C-terminal beta sandwich domain 561 640 IPR041233 -
Seca12g06088 643 SUPERFAMILY Ricin B-like lectins 495 569 IPR035992 -
Seca12g06088 643 Gene3D Aldolase class I 28 385 IPR013785 -
Seca12g06088 643 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Seca12g06088 643 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Seca12g06088 643 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Seca12g06088 643 SUPERFAMILY Glycosyl hydrolase domain 559 641 - -
Seca12g06088 643 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Seca12g06088 643 Gene3D - 557 642 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06088 Seca-Chr12 152735606 152741909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06088 11 472 Glycoside Hydrolase AT3G26380 67.527 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06088 - - gmx:100783705 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06088 12 152735606 152741909 Seca12g06088 12 152735606 152741909 ECH
Seca12g06088 12 152735606 152741909 Seca6g01837 6 75042341 75056203 PCT