Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01824 ATGGGAGGGAATAGCTCAAAACGGAGTTCTAGTAGGAGGCAATATGTTCCGTCATATGAATCTGGTGGCTCTTCTTCTTCTTCTTCATGGGATAACTATGGGGGATACCCACCACAATCACCATACCCTCAGCAAAGTCCTTATCATCAAACCCCTCAACACAACCGTCCATCAGCTTCAGCTCCATTTTATCACTATTCACAGCCAAGGAGGAAGTTGGATAAGAGGTATTCCAGGATAGCTGATAATTACCGTTCACTGGATGAGGTTACTGCCGCTCTTGCAAATGCTGGCTTGGAATCCTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGAAAGGTGTCATTCAATCGAAAAAGTTTGCATCACATTGGAAATGGTCAAAATCCTTATGAACAAGCAATCTCTATCATTGGGAAAACTTTATCTACTTTCGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCTACACATGATCAAGATGTATTTAGCTTCTATTCAGAAGAGAGGTACTGCAACGGGTTTGAGGAAGTTTTGACAAGATACAGAGGAATTGTTCCTCACCTCAAACTTGCAGGACCCACTTCATTTGCCCCTGTTATTGAAATGGCCATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACCAGAAGCGTTGACACAAGGCATGGCCACTTAAGTCCACAGGAACAGAAGACAATAGATGCAATTGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCGTGGGATATGATGAAGGAATTTGATGATAACATACCTTCTCGGGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACAAGGAATGCAAATTCAACCAGAAGAGAGACAGAGTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAGCTTGGCATATTGGGTGCGCGGAGGGGTCATTCACCAGATAGGGTTCCTCTACCCCCACCTCTTTATAATAGGACTTCTTCCAGCATCAGCTCAAAATCTTATCGGTCAAACAGTTCTCAGACGAGTGCACCTAGTCCTACTAGACAAACTGGCTATGATAGTAGTGTTCACACAGAACCATCTACAAGCTCCTTATATGACAATAAGTTTTGCCCAATTTGTCTTACCAATGTGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGCATGTGGAGAAGACCTCCAATTATGTCCTATTTGCCGGAGCACAATCCATACTAGGATAAAGCTTTACTAG 1350 0.4222 MGGNSSKRSSSRRQYVPSYESGGSSSSSSWDNYGGYPPQSPYPQQSPYHQTPQHNRPSASAPFYHYSQPRRKLDKRYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKVSFNRKSLHHIGNGQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQDVFSFYSEERYCNGFEEVLTRYRGIVPHLKLAGPTSFAPVIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTRHGHLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFTEIMTRNANSTRRETEFALSALMEIPSQYKATIELGILGARRGHSPDRVPLPPPLYNRTSSSISSKSYRSNSSQTSAPSPTRQTGYDSSVHTEPSTSSLYDNKFCPICLTNVKDMAFGCGHQTCCACGEDLQLCPICRSTIHTRIKLY. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01824 449 PANTHER COPINE FAMILY PROTEIN 1 44 426 - -
Seca6g01824 449 MobiDBLite consensus disorder prediction 1 66 - -
Seca6g01824 449 MobiDBLite consensus disorder prediction 1 39 - -
Seca6g01824 449 MobiDBLite consensus disorder prediction 46 62 - -
Seca6g01824 449 SUPERFAMILY vWA-like 103 285 IPR036465 -
Seca6g01824 449 SUPERFAMILY RING/U-box 398 443 - -
Seca6g01824 449 MobiDBLite consensus disorder prediction 343 398 - -
Seca6g01824 449 CDD vWA_copine_like 80 330 IPR010734 -
Seca6g01824 449 SMART VWA_4 101 304 IPR002035 -
Seca6g01824 449 ProSiteProfiles Zinc finger RING-type profile. 406 439 IPR001841 -
Seca6g01824 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 449 IPR013083 -
Seca6g01824 449 Pfam Zinc finger, C3HC4 type (RING finger) 403 443 - -
Seca6g01824 449 MobiDBLite consensus disorder prediction 356 398 - -
Seca6g01824 449 Pfam Copine 126 339 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01824 Seca-Chr6 74790472 74795391 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01824 K16280 - gmx:100798816 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06081 12 152674870 152679768 Seca6g01824 6 74790472 74795391 PCT