Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06081 ATGCAGCAGCTAGAGCTAGATACTTGGACAGCTTTGGTTGTTATTTTGTGTTTCCTTGGCTTGATTCTAAAGGAAACAATCATGGGAGGAAATAGTTCAAAAGGGTGTGACAGGAGACATGTTTCATCATATGGGTCTGCTGGTTCTTCATCTTCATGGGATAATAATAACTATGGAGGATACCCCCAATCATCACCATATTCATACCAACAACAAAATTCATATCAAACACCCCTTCACCACCGTGCACCTGCTCCATTTCATGACCATGCACAGCCAAAAAGGAAGTTAGATAGGAGATATTCCAGGATAGCTGATGATTACCATTCACTGGACGAGGTTACTGCTGCTCTTTCACATGCTGGCCTAGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATCACATTGGAAGTGGTCTTAATCCTTATGAACAAGCAATCTCGATTATTGGGAAAACTTTAAGTGCTTTCGATGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCCATCCAGATGAGAGATTCTGCAATGGATTTGAGGAAGTTTTGTCCAAATATAGAGAGATTGTTCCTCGACTCCGACTAGCAGGACCCACCTCATTTGCCCCTATTATTGAGATGGCTATGACTATAGTTGAACAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACAAAACATGGCCAGCTAAGTCCACAGGAACAGAGGACAATTGATGCAATTGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGAAATGATGAGGGAGTTTGATGATAATATTCCAGCTCGAGCCTTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAACATCAAGCAGTGCAGATTCAAGCAGAAAAGAGACTGAATTTGCTCTAGGTGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCTTGGCATATTGGGTGCACGGAGAGGACATTCACCAGACAGGGTTCCTCTACCTCCACCTTATAGTTATGATAGAGCTTCTTCTAGCAACAACACATCTTTTCGTTCAAACAGTTTTCAGCAGAGTACACATACATATGCTGGCCCTGTCAATGAAGTTAGCACAGGATCATCTTCAGGTGGCTTATATGACAATAAGATTTGCCCAATTTGTCTTACTAATGGAAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGACTGTGGAGAAAGCCTTGAATTCTGCCCTATTTGCCGCAGCACAATCACTACCAGAATAAGGCTTTACTAG 1413 0.4133 MQQLELDTWTALVVILCFLGLILKETIMGGNSSKGCDRRHVSSYGSAGSSSSWDNNNYGGYPQSSPYSYQQQNSYQTPLHHRAPAPFHDHAQPKRKLDRRYSRIADDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSGLNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFHPDERFCNGFEEVLSKYREIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTKHGQLSPQEQRTIDAIVKASEYPLSIVLVGVGDGPWEMMREFDDNIPARAFDNFQFVNFTEITSSSADSSRKETEFALGALMEIPSQYKATIDLGILGARRGHSPDRVPLPPPYSYDRASSSNNTSFRSNSFQQSTHTYAGPVNEVSTGSSSGGLYDNKICPICLTNGKDMAFGCGHQTCCDCGESLEFCPICRSTITTRIRLY. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06081 470 MobiDBLite consensus disorder prediction 33 96 - -
Seca12g06081 470 SMART VWA_4 125 328 IPR002035 -
Seca12g06081 470 Pfam Copine 150 363 IPR010734 -
Seca12g06081 470 MobiDBLite consensus disorder prediction 36 79 - -
Seca12g06081 470 MobiDBLite consensus disorder prediction 368 397 - -
Seca12g06081 470 SUPERFAMILY vWA-like 126 309 IPR036465 -
Seca12g06081 470 PANTHER COPINE FAMILY PROTEIN 1 71 447 - -
Seca12g06081 470 Pfam Zinc finger, C3HC4 type (RING finger) 424 465 - -
Seca12g06081 470 SUPERFAMILY RING/U-box 421 466 - -
Seca12g06081 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 470 IPR013083 -
Seca12g06081 470 ProSiteProfiles Zinc finger RING-type profile. 427 460 IPR001841 -
Seca12g06081 470 MobiDBLite consensus disorder prediction 382 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06081 Seca-Chr12 152674870 152679768 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06081 K16280 - gmx:100800161 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06081 12 152674870 152679768 Seca12g06081 12 152674870 152679768 ECH
Seca12g06081 12 152674870 152679768 Seca6g01824 6 74790472 74795391 PCT