Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01797 ATGGCATCAACCATAGCAACAATGGCCATGATCAACTCCAAGTGCCTAAACACATCCTTACCCAAGTTGCACAACACCAAGCTCACAGCTTCAAAACCCACAACCTCCCTCTTTTCCTTTCAGAACCTGCCAAAGGGCCTTCTTGCCTCCTCCACCGAAAATTCCACCGTGTCCACTTCCATAGCAGGCACTGCCATCGCTGGAGCCATATTCTCGTCCCTTAGTAGCTGTGACGCTGCCTTCGCTGCTCAGCAAATAGCTGAAATAGCAGAAGGCAGCGATAACCGTGGGCTTGCACTGTTATTGCCCTTGATTCCAGCCATAGCATGGGTTCTGTTCAACATTCTGCAGCCAGCTCTGAACCAAATCAACCGCATGCGTAGTAGCAAAGGGGTGATCATCGGGCTTGGGCTTGGCGGGCTTGCGGGCTTGGGCTTGGTGTCGGCACCAGACGCATCGGCTAGTGAGATGGCTATGATTGCTGATGCTGCGGCCAATGACAACAGGGGGCAGCTTCTGCTGTTTGTGGTTGCCCCAGCTATTGTTTGGGTTCTCTACAACATTTTGCAGCCTGCTCTCAACCAGATCAACAGGATGAGGTCCTAG 606 0.5248 MASTIATMAMINSKCLNTSLPKLHNTKLTASKPTTSLFSFQNLPKGLLASSTENSTVSTSIAGTAIAGAIFSSLSSCDAAFAAQQIAEIAEGSDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSSKGVIIGLGLGGLAGLGLVSAPDASASEMAMIADAAANDNRGQLLLFVVAPAIVWVLYNILQPALNQINRMRS. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01797 201 Hamap Photosystem II protein Y [psbY]. 94 128 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Seca6g01797 201 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 201 IPR038760 GO:0009523
Seca6g01797 201 Pfam Photosystem II protein Y (PsbY) 94 126 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Seca6g01797 201 Pfam Photosystem II protein Y (PsbY) 167 199 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01797 Seca-Chr6 74174892 74175497 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01797 K02723 - zju:107428525 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01797 6 74174892 74175497 Seca6g01797 6 74174892 74175497 ECH
Seca12g06072 12 152593095 152593700 Seca6g01797 6 74174892 74175497 PCT