Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06072 ATGGCAGCAACCACAGTAACAATGGCCATGATCAATGCTAAGTGCTTCAACACTTCAGGGTCACCAAAATTCCCCAACCCCACCAAGCTCATCACTTCAAAACCCACCTCCCTCCTTTCCCTTCAGAACCTGCCAAAGGGCATGGTCTCAACAAAAGAAACCACTAAACTATCCAATTCCATAACAGGCACAGCAATTGCAGGAGCCATTTTCTCAACCCTTGGAAGCTGTGACCCTGCTTTTGCAGCACAGCAAATAGCTGAAATAGCCGAAGGAGATAACCGTGGGTTAGCACTGTTGTTACCCATAATTCCAGCCATAGGTTGGGTTCTGTTCAACATTCTGCAACCAGCACTTAACCAAATCAACCGCATGCGTAGCACAAAAGGGGTGATAATTGGGTTGGGTCTTGGAGGGTTAGCAGCTTCAGGGTTGGTAGTGTCAACACCAGATGCATCAGCCAGTGAGATCGCTGTGATTGCTGAAGCTGCAAGTGACAACAGGGGACAACTTCTGCTGTTTGTGGTTGCACCTGCTATTCTTTGGGTTCTTTACAACATTTTGCAGCCTGCTCTCAACCAGCTCAATAGGATGAGATCCCAGTGA 606 0.4769 MAATTVTMAMINAKCFNTSGSPKFPNPTKLITSKPTSLLSLQNLPKGMVSTKETTKLSNSITGTAIAGAIFSTLGSCDPAFAAQQIAEIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQINRMRSTKGVIIGLGLGGLAASGLVVSTPDASASEIAVIAEAASDNRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSQ. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06072 201 Hamap Photosystem II protein Y [psbY]. 93 127 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Seca12g06072 201 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 200 IPR038760 GO:0009523
Seca12g06072 201 Pfam Photosystem II protein Y (PsbY) 93 125 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Seca12g06072 201 Pfam Photosystem II protein Y (PsbY) 166 198 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06072 Seca-Chr12 152593095 152593700 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06072 K02723 - zju:107428525 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06072 12 152593095 152593700 Seca6g01797 6 74174892 74175497 PCT