Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01793 ATGGGTTGCTGTATAATCAATAGTCTCAAGACCCAACCCTTATGGTTCATCGCGCTCTTCGCTGTGGGTCTCTTGGCGATTCTGAGATTCGCTTTGGTTTTTCTCAGATGGGTCTATGTCAATTTCCTCAGGCCTCCCAAAAACCTCAAAAAGTACGGATCTTGGGCACTCGTTACTGGGCCCACTGATGGCATTGGAAAAAGCTTCGCCTTTGAGCTCGCTCGCAAAGGCTTGAATCTGGTCTTGGTGGGTCGGAACCCTGATAAACTGAAGGACGTTTCGGATTCGATTCTCGCCAAGTTCGGGAAAACCGAGGTTAAGACGGTTGTGGTTGATTTCGCTGGCGATCTCGACGAGGGTGTGAAGAGGATTGGGGAAGCGATTGAAGGGTTGGATGTTGGGGTTCTGATTAACAACGTGGGTGTTTCGTACCCTTACGCTAGATTCTTCCATGAAGTGGATGAGGAGCTTCTGAAGAATCTGATTAATGTGAACATCATTGGAACTACCAAGGTTACTCAAGCTGTTCTACCAGGGATGCTTAAGAGAAAGAAAGGAGCAATTGTTAACATTGGTTCTGGAGCTGCCATTGTGATTCCTTCAGATCCCCTTTATGCTGTTTATGCCGCCACTAAAGCGTACATCGATCAATTTTCAAGATGTCTCTATGTTGAATACAAGAAGAGTGGCATTGACGTGCAGTGTCAGGTTCCATTATATGTGGCAACAAAGATGGCATCAATCAAGAGATCTTCATTCTTTGTTCCATCAACAAATGGGTATGCCAAAGCAGGTGTGAGATGGATAGGCTATGACCCTCGCTGCACACCATACTGGCCCCATACCCTTCTTTGGGCCTTGACATGCTCATTGCCTGAGTCTATTATTGATGCTTGGCGCCTGAGGTTTTGTATGGGTATTCGAAAGAGGGGACAGCTCAAGGAGGCAAGGAAGAAGGAGACATAG 966 0.4669 MGCCIINSLKTQPLWFIALFAVGLLAILRFALVFLRWVYVNFLRPPKNLKKYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSILAKFGKTEVKTVVVDFAGDLDEGVKRIGEAIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLINVNIIGTTKVTQAVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKRSSFFVPSTNGYAKAGVRWIGYDPRCTPYWPHTLLWALTCSLPESIIDAWRLRFCMGIRKRGQLKEARKKET. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01793 321 PIRSF 11-beta-HSD1 5 314 - -
Seca6g01793 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Seca6g01793 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Seca6g01793 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Seca6g01793 321 Gene3D - 49 264 - -
Seca6g01793 321 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 49 277 - -
Seca6g01793 321 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Seca6g01793 321 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Seca6g01793 321 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Seca6g01793 321 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Seca6g01793 321 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Seca6g01793 321 PANTHER RH59310P 14 319 - -
Seca6g01793 321 Pfam short chain dehydrogenase 55 247 IPR002347 -
Seca6g01793 321 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Seca6g01793 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 311 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01793 Seca-Chr6 74032355 74034845 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01793 5 320 Lipid Metabolism Gene Families AT1G67730 64.557 4.91e-164 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01793 K10251 - gmx:100814139 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06070 12 152576402 152583731 Seca6g01793 6 74032355 74034845 PCT