Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06070 ATGCTTCATATAGCATGCAGCAGCAGCAGCAGCACTAATGGCCATAGCCATTACTTTGCAGTAGCACTCTTCATCATCATCATCTCATCCCTCGGTTTGATCGTCACACTCAACCACTTCATCTCACTTTCCACATGGATTTTCAAAAAGTTTTTCAGATCCGAGAAACACCTCCTCAGAACCTACGGTTCATGGGCTCTGATCACCGGAGCCACTGACGGCATCGGAAAAGCCTTCTCCTACGAGCTAGCACAGAGAGGCTTCAACCTCGTTCTCGTAAGCAGAAGCTCCAAAAAGCTCGAAACAGTTGCGGCTGAAATCCAAGCGAAAAATCCTGACACGCACATCAAGATCATCGAGATGGACTTTTCCGGCGACATCACGGCGGGTCTCCGGCGAGTAGAAGAGGTGGCGAAGGAATTGGATCTTGGAATTTTGATAAACAACGTGGGAATGACATACCCTGGGGCGATGTGGTTCCATGAGGTGGAGGAGAAATTGTGGAGGAAGATTGTGAGAGTGAACATTGAAGGGACAACGATAGTAACGAAAGCAGTATTGGAAGGGATGATAGAAAGGAAAAAGGGTGCGATAGTGAATATTGGGTCAGGTGCTGCGGTGGTTGTGCCTTCACATCCTCTCTTTGCAATCTATGCTGCAACAAAAGCTTACGTGGACCAGTTTTCAAGATCTCTATACGTGGAGTATGGACAACATGGGATCCACGTGCAATGTCAGAAGGTACCACTATACGTTGCGACGAAAATGGTATCAAAGGTGGCATGTATTCAGAAAGATTCATTGTTCATACCAACACCTGAGGGCTACGCAAGAGCTGCAGTGAGTGAAATTGGATATGAACCAAAGTGCACACCTTATTGGGCTCACTCTATTCAGTGGTACTTTGCACACTTAACTCCTGACCCGCTTCTTGATGCTTGGCGCTTGTCCATTGGTGTGCGCCGCAGGATCACTAGCAATAGCAAAGGATAA 993 0.4723 MLHIACSSSSSTNGHSHYFAVALFIIIISSLGLIVTLNHFISLSTWIFKKFFRSEKHLLRTYGSWALITGATDGIGKAFSYELAQRGFNLVLVSRSSKKLETVAAEIQAKNPDTHIKIIEMDFSGDITAGLRRVEEVAKELDLGILINNVGMTYPGAMWFHEVEEKLWRKIVRVNIEGTTIVTKAVLEGMIERKKGAIVNIGSGAAVVVPSHPLFAIYAATKAYVDQFSRSLYVEYGQHGIHVQCQKVPLYVATKMVSKVACIQKDSLFIPTPEGYARAAVSEIGYEPKCTPYWAHSIQWYFAHLTPDPLLDAWRLSIGVRRRITSNSKG. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06070 330 Pfam short chain dehydrogenase 65 259 IPR002347 -
Seca12g06070 330 PIRSF 11-beta-HSD1 15 329 - -
Seca12g06070 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Seca12g06070 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 152 IPR002347 -
Seca12g06070 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 196 204 IPR002347 -
Seca12g06070 330 Gene3D - 58 292 - -
Seca12g06070 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 60 315 IPR036291 -
Seca12g06070 330 PRINTS Glucose/ribitol dehydrogenase family signature 190 206 IPR002347 -
Seca12g06070 330 PRINTS Glucose/ribitol dehydrogenase family signature 141 152 IPR002347 -
Seca12g06070 330 PRINTS Glucose/ribitol dehydrogenase family signature 65 82 IPR002347 -
Seca12g06070 330 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Seca12g06070 330 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 59 291 - -
Seca12g06070 330 CDD 17beta-HSD1_like_SDR_c 63 307 - -
Seca12g06070 330 PANTHER RH59310P 23 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06070 Seca-Chr12 152576402 152583731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06070 24 323 Lipid Metabolism Gene Families AT1G24470 58.667 3.61e-122 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06070 K10251 - csin:114314729 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06070 12 152576402 152583731 Seca12g06070 12 152576402 152583731 ECH
Seca12g06070 12 152576402 152583731 Seca6g01793 6 74032355 74034845 PCT