Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01709 ATGCCTGGTTTTGTTGGAAAGAAGAGAATTATAGAGCCAAGTATGTGTTTCACCAATTTGGTCAATCAAGATAAATCAAGTCGTTCACAAAGTGATCATTGTTTAACCTCTGAGGCACTGGATATAGATGATAGCCCCATTCTACCTGGGCTGCCTGATGATGTGGCAAAGCATTGCCTTGCACTTGTGCCTCGTTCCAACTTCCCAGCTATGGGTGGTGTCTGTAAGAGATGGAGGTTGTTTATTCAAAGTAAAGAATTTGTAACTGTGCGAAAATTGGCAGGGATGCTTGAGGAATGGCTCTATTTCTTAACAATGGACAGGGAAGGAAAAGAAAGCCACTGGGAGGTTATGGATTGTCTCGGTCATAAATGCCGATCTCTTCCACCAATGCCTGGTCTAGGAAAGGCTGGGTTCGGGGTGGTGGCTCTTAATGGAAAGCTTCTTGTTATGGCTGGTTATTCAGCAATTGAAGGAACTGCCTTTGCCTCAGCAGAGGTTTACCAATATGATTCTTGCCTCAACAGTTGGAGCAGATTATCAAACATGAATGTGGCTCGTTATGACTTTGCTTGTGCTGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGCTATGGGGTGAACGGTGACAGTCTCTCCAGTGTTGAGGTGTATGATCCAGATACTAACAAGTGGACAATGATAGAGAGCCTTCGTCGCCCAAGATGGGGTTGCTTTGCCTGTGGATTTGAGGGTAAGCTCTATGTCATGGGTGGAAGGTCAAACTTTACTATTGGAAATTCCAAGTTTGTTGATATATATAACCCTGAGAGACACAGCTGGTGCGAGATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTATTAGGAAAGAAGTTGTTCTGTATAGAGTGGAAAAACCAGCGGAAGCTAACAATATTCAGTCCAGAGGACAACTCATGGAAAATGGTACCAGTCCCATTGACAGGGAGTTCAAGTATCGGTTTTCGATTTGGGATACTGGATGGAAAGCTGTTGCTATTTCCACTGGAGGCAGAACCTGCTTATCAGACATTGTTATATGATCCAAATGCAACTCTGGGGTCAGAGTGGCAAACTTCTGACATAAGGCCATCTGGTTTGTGCTTGTGCAGTGTAACAATCAAGGCATGA 1155 0.4416 MPGFVGKKRIIEPSMCFTNLVNQDKSSRSQSDHCLTSEALDIDDSPILPGLPDDVAKHCLALVPRSNFPAMGGVCKRWRLFIQSKEFVTVRKLAGMLEEWLYFLTMDREGKESHWEVMDCLGHKCRSLPPMPGLGKAGFGVVALNGKLLVMAGYSAIEGTAFASAEVYQYDSCLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYGVNGDSLSSVEVYDPDTNKWTMIESLRRPRWGCFACGFEGKLYVMGGRSNFTIGNSKFVDIYNPERHSWCEIKNGCVMVTAHAVLGKKLFCIEWKNQRKLTIFSPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFPLEAEPAYQTLLYDPNATLGSEWQTSDIRPSGLCLCSVTIKA. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01709 384 Gene3D - 85 381 IPR015915 GO:0005515
Seca6g01709 384 PANTHER OS02G0202900 PROTEIN 8 380 IPR045887 -
Seca6g01709 384 Pfam Kelch motif 137 184 IPR006652 GO:0005515
Seca6g01709 384 Pfam Kelch motif 186 231 IPR006652 GO:0005515
Seca6g01709 384 SUPERFAMILY Kelch motif 98 342 IPR015915 GO:0005515
Seca6g01709 384 CDD F-box_AtAFR-like 47 91 - -
Seca6g01709 384 Pfam Kelch motif 235 278 IPR011498 GO:0005515
Seca6g01709 384 SMART fbox_2 51 91 IPR001810 GO:0005515
Seca6g01709 384 SUPERFAMILY F-box domain 42 90 IPR036047 GO:0005515
Seca6g01709 384 Pfam F-box domain 50 87 IPR001810 GO:0005515
Seca6g01709 384 SMART kelc_smart 147 197 IPR006652 GO:0005515
Seca6g01709 384 SMART kelc_smart 198 245 IPR006652 GO:0005515
Seca6g01709 384 SMART kelc_smart 246 292 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01709 Seca-Chr6 71714880 71716233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01709 51 229 Miscellaneous Gene Families AT4G33900 26.425 9.22e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01709 - - gmx:100802912 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01709 6 71714880 71716233 Seca12g05699 12 148607911 148610655 PCT