Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05699 ATGCCTGGTTTTGTTGCTGACAAGAAGAGATTTACAGAGCCAAATATGTGTTTTTCCAATTTGGCCAATCAGGATAAATCAACTCTTTCAAAAAGCAATCGTTGTGTGAGGTCTGAGGCTCTGGATGATGATGATGATAATGGTAGCCCCATTCTTCCTGGGCTGCCTGATGATGTTTCAAAGTATTGCCTTGCACTTGTGCCTCGTTCTAACTTCCCAGCTATGGGTGGTGTCTGTAAGAGATGGAGGCGCTTTGTTCAAAGCACAGAATTCATAACTGTGCGAAAATTGACTGGGCAGCTTGAAGAATGGCTTTATATCCTAACAGCAGATAGTGAAGGAAAAGGATGTCACTGGGAGGTTATGGATTGTACGGGTCACAATCGTCAATCTCTTCCACCAATGCCTGGTACAGAAAAAGCTGAGTTTGGGGTAGTGGTTCTTAATGGCAAGCTTCTTGTTATGGCTGGCTATTCATTAATTGATGGAACTGCCTTTGCTTCAGCAGAGGTTTACCAATATGATTCTTGCCTCAACAGCTGGAGTAGATTATCGGACATGAATGTAGCTCGGTATGACTTTGCTTGTGCTGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGCTATGGGGAAAATGGTGACAGTCTCTCCAGTGCTGAGGTGTATGACCCAGATACTGACAAATGGACTCTGATTGAGAGCCTTCGTCGCCCGAGGTGGGGCTGCTTTGCATGTGGGTTTGAAGGGAAGCTCTATGTGATGGGTGGGAGGTCAAGCTTTACAATTGGAAATTCCAAGTTTGTTGATATTTACAACCCTGAGAAGCACGGGTGGTGTGAGATGAAAAATGGCTGTGTCATGGTCACTGCTCATGCAGTGCTGGGAAAGAAGTTGTTCTGCATGGAGTGGAAGAACCAGCGGAAGTTAGCAATATTCAATCCAGAGGACAATTCATGGAAAATGGTACCAGTCCCTTTGACAGGGAGTTCAAGTATTGGCTTTCGATTTGGGATATTGGATGGCAAGCTTTTGCTATTCTCACTAGAGGAAGATCCTACATACAGGACTTTATTGTATGATCCAAATGCATCCCCGGGGTCTGAGTGGCAGACTTCTGAGATAAAACCATCTGGTTTGTGCTTGTGCAGTGTAACTATCAAGGCCTGA 1167 0.4482 MPGFVADKKRFTEPNMCFSNLANQDKSTLSKSNRCVRSEALDDDDDNGSPILPGLPDDVSKYCLALVPRSNFPAMGGVCKRWRRFVQSTEFITVRKLTGQLEEWLYILTADSEGKGCHWEVMDCTGHNRQSLPPMPGTEKAEFGVVVLNGKLLVMAGYSLIDGTAFASAEVYQYDSCLNSWSRLSDMNVARYDFACAEVNGLVYAVGGYGENGDSLSSAEVYDPDTDKWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDIYNPEKHGWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEDPTYRTLLYDPNASPGSEWQTSEIKPSGLCLCSVTIKA. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05699 388 PANTHER OS02G0202900 PROTEIN 8 384 IPR045887 -
Seca12g05699 388 SMART kelc_smart 202 249 IPR006652 GO:0005515
Seca12g05699 388 SMART kelc_smart 151 201 IPR006652 GO:0005515
Seca12g05699 388 Pfam Kelch motif 190 235 IPR006652 GO:0005515
Seca12g05699 388 Pfam Kelch motif 142 188 IPR006652 GO:0005515
Seca12g05699 388 Pfam Kelch motif 239 283 IPR011498 GO:0005515
Seca12g05699 388 CDD F-box_AtAFR-like 51 95 - -
Seca12g05699 388 SUPERFAMILY F-box domain 49 92 IPR036047 GO:0005515
Seca12g05699 388 Gene3D - 89 386 IPR015915 GO:0005515
Seca12g05699 388 Pfam F-box domain 54 88 IPR001810 GO:0005515
Seca12g05699 388 SUPERFAMILY Kelch motif 102 350 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05699 Seca-Chr12 148607911 148610655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05699 55 233 Miscellaneous Gene Families AT4G33900 29.744 4.88e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05699 - - gmx:100815474 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05699 12 148607911 148610655 Seca12g05699 12 148607911 148610655 ECH
Seca6g01709 6 71714880 71716233 Seca12g05699 12 148607911 148610655 PCT