Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01677 ATGAGAACCAGGAGAGGCCTCTCTTATCCTCCCCTTCCAACCATGTCTTCACAAACAACCAAACCCTCCCGGAAACGCCAGAAAAAATCGGCGGAAAAAACCGCCGGAGATTCCGATTTGTTTGAGTCTTTGCCCGACGACCTTGTCCTCTCTATCCTCTCTAAGCTTAGTTCCACCGCAAGTTCCCCCTCCGATTTCATCAATGTTCTCATTACGTGCAAGAGACTAAACGCCTTAGGTCTTCACTCTCTTGTGTTGTCAAAAGCATCTCATAAAACATTCTCAGTGAAAGCTAAAAACTGGTGCGACTCTTCTCACAGATTTCTCAAACTCTGTGCCGATGCCGGAAACATTGAAGCGTGTTACACTCTCGGCATGCAGATTCGGTTCTATTGCTTGCAAAACAGAGGAAGCGGCGCGTCGCTTATGGCGAAAGCTGCGATGAACTCTCACGCGCCGGCTCTTTACTCGCTTGCGGTTATTCAGTTCAACGGCAGCGGGGGAACGAAAAATGACAAGGACCTTAGAGCTGGAGTGGCTCTATGCGCACGCGCTGCGTTCCTTGGCCACATCGACGCGCTGCGTGAGCTTGGGCATTGTTTGCAAGACGGTTACGGTGTTAAGCAGAACGTGACGGAGGGGCGGCGGTTTCTTGTTCAAGCAAACGCGAGAGAACTTGCTGCCGTTTTGTCCTCCGTTAACAACAAACGGCCATGGATGACGTGGAGCCTCCACCAGGTTCCGCAGCAGAACCCGAGGCTTCAGGGTATCGCCGGGTCGGGTTGTCCGTTACTCAGCGATTTCGGTTGCAACGTGCCGGCACCGGAGGCTCACCCGGCGAGCCGGTTCATGACGGAGTGGTTTGCTATTCGGGGCGGGTCACCCGGTTCGGGAATGAGGCTGTGTTCACATTCGGGTTGTGGCCGACCCGAGACGAGGAAGCACGAGTTTCGAAGGTGCTCGGTTTGCGGTGCGGTGAATTACTGCTCACGCGCGTGCCAAGCGCTTGATTGGAAGTTCCGCCACAAAGCGGAGTGCGCCCCCGTTGAAAGGTGGCTTGATGAGGACGGTGAACATGCCGTCGGTGAGGATGACGGCGGCGTTAACGGTGATGTGGTTGTTGTGGTTGATAGTTAG 1137 0.5435 MRTRRGLSYPPLPTMSSQTTKPSRKRQKKSAEKTAGDSDLFESLPDDLVLSILSKLSSTASSPSDFINVLITCKRLNALGLHSLVLSKASHKTFSVKAKNWCDSSHRFLKLCADAGNIEACYTLGMQIRFYCLQNRGSGASLMAKAAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVTEGRRFLVQANARELAAVLSSVNNKRPWMTWSLHQVPQQNPRLQGIAGSGCPLLSDFGCNVPAPEAHPASRFMTEWFAIRGGSPGSGMRLCSHSGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECAPVERWLDEDGEHAVGEDDGGVNGDVVVVVDS. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01677 378 Gene3D Tetratricopeptide repeat domain 85 237 IPR011990 GO:0005515
Seca6g01677 378 MobiDBLite consensus disorder prediction 1 38 - -
Seca6g01677 378 SUPERFAMILY HCP-like 102 222 - -
Seca6g01677 378 Gene3D - 295 350 - -
Seca6g01677 378 PANTHER MYND DOMAIN-CONTAINING 1 366 IPR044508 -
Seca6g01677 378 ProSiteProfiles Zinc finger MYND-type profile. 304 346 IPR002893 -
Seca6g01677 378 SUPERFAMILY F-box domain 28 97 IPR036047 GO:0005515
Seca6g01677 378 CDD F-box_SF 42 79 - -
Seca6g01677 378 SUPERFAMILY HIT/MYND zinc finger-like 301 351 - -
Seca6g01677 378 Pfam MYND finger 307 346 IPR002893 -
Seca6g01677 378 FunFam Predicted protein 294 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01677 Seca-Chr6 71021672 71023316 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01677 - - gmx:100798136 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01677 6 71021672 71023316 Seca12g05711 12 148762041 148763389 PCT