Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05711 ATGAGAACCAGGAGAGGGGCGTGTTCCGATGTGGGGGTTGCAAAGAGAAAGAAGGATTTGCATATACAACCTATGAATAAAAGACAGAAGAAATGTCCTGAAAAAACAGTCATAGGAAATGATTTATTTGAGTCTTTACCAGATGACCTTGTAATCTCCATCTTCTCCAAGCTTAGCTCCACCGCGACTTCACCTTCTGATCTTGTTAATGTGATGACAACGTGTAAGAGATTAAACAAATTAGCGCTTCATCCTCTTGTGTTATCTAAAGCCTCTCCGAAGATTTTCTCTATTAAAGCTAAAAACTGGTGCGATTCTGCACATCGCTTGTTTAAACTGTGTGCCGATGCCGGAAACGTTGAAGCTTGTTACACTTTGGGCATGATTCGGTTTTACTGTTTGCAAAACAGAGGAAGCGGGGCTTCGTTAATGGCGAAGGCTGCCATAAGCTCTCACGCGCGTGCGCTTTACTCGCTCTCGGTGATTCAATTCAACGGCAGCGGCGGCACAAAGAATGACAAGGACCTCCGTGCCGGCGTGGCTCTCTGCGCCAGAGCTGCTTTTCTCGGCCACATTGACGCACTGCGCGAGCTTGGTCACTGTTTACAAGACGGTTATGGTGTGAAGCAGAACATTGCTGAAGGTAGGAGGTTTCTCATTCAGGCCAATGCTCGGGAACTAGCTGCAGTGCTCTCCACCGGAGCCACCGCACATCACTGGAAGACCGGGAAAATCAACCCGCAGCTCCTGCGCATGGCGTCGGGGTCTCCGCTGCTCAGCGATTTTGGCTGCAACGTGCCGGCGCCGGAGCCGCATCCGGCGAGCCGGTTCATGGCTGAGTGGTTCGCGGCTAGGGGCGGGTCGCCGGGTCCAGGCCTGAGGCTTTGCTCGCATGCAGGTTGTGGTAGGCCGGAGACGAGGAAGCATGAGTTTCGCCGGTGCTCGGTGTGTGGTGCGGTGAATTACTGCTCACGCGCGTGCCAAGCGCTTGATTGGAAGTTCCGGCACAAGGTGGAGTGCGCCCCCGTGGAGCAGTGGCTTGATGAAGAAGGTGAGGATGCCGCTGACGGCGTCGACGGCGAGGTGGGGGTTATGGAGGATAGTTAG 1107 0.5348 MRTRRGACSDVGVAKRKKDLHIQPMNKRQKKCPEKTVIGNDLFESLPDDLVISIFSKLSSTATSPSDLVNVMTTCKRLNKLALHPLVLSKASPKIFSIKAKNWCDSAHRLFKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHARALYSLSVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNIAEGRRFLIQANARELAAVLSTGATAHHWKTGKINPQLLRMASGSPLLSDFGCNVPAPEPHPASRFMAEWFAARGGSPGPGLRLCSHAGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKVECAPVEQWLDEEGEDAADGVDGEVGVMEDS. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05711 368 Gene3D - 42 89 - -
Seca12g05711 368 PANTHER MYND DOMAIN-CONTAINING 1 357 IPR044508 -
Seca12g05711 368 SUPERFAMILY HCP-like 101 223 - -
Seca12g05711 368 Pfam F-box-like 44 85 IPR001810 GO:0005515
Seca12g05711 368 ProSiteProfiles Zinc finger MYND-type profile. 298 340 IPR002893 -
Seca12g05711 368 CDD F-box_SF 44 82 - -
Seca12g05711 368 Gene3D Tetratricopeptide repeat domain 90 241 IPR011990 GO:0005515
Seca12g05711 368 Pfam MYND finger 300 340 IPR002893 -
Seca12g05711 368 SUPERFAMILY F-box domain 33 97 IPR036047 GO:0005515
Seca12g05711 368 FunFam Predicted protein 288 345 - -
Seca12g05711 368 Gene3D - 292 345 - -
Seca12g05711 368 SUPERFAMILY HIT/MYND zinc finger-like 295 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05711 Seca-Chr12 148762041 148763389 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05711 - - gmx:100798174 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05711 12 148762041 148763389 Seca12g05711 12 148762041 148763389 ECH
Seca6g01677 6 71021672 71023316 Seca12g05711 12 148762041 148763389 PCT