Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01615 ATGTCTGCTGCTGTGGGAGCTGTCTCCTCCACAACCAAGGATGTTCCTTTCAACCCTCATTTAGAGGAAGAAGAGATAAAAAACAAAGAAGCTAATAACAGTACTGGTAGGGAACCAGTTCAGCTTCCTTTCAGTGATGCTGCCAACTCTGATAATGCTGAAGAAGAAACTGAACCAGAGGAAGATGATGACCCCAAGTTGGAATCTGACAGGGAATTGGATCTTGGTCCTCAATTTACCCTCAAGGAACAACTTGAGAAAGATAAAGATGATGAAAGTTTGAGAAAATGGAAGGAGAAACTTCTGGGGAGTGTTGATATTTCAACCGTTGGAGAAAGCAAAGACCCAGAAGTGAAGGTACTGAGCCTCACTATTACATACTCAAACAGGCCTGACCTCATCCTTCCAATTCCATTTACTAATGATCCTAAGAAGAGTCTCTTCATCCTTAAGGAAGGAACACAATGCCGCATGAAATTCACCTTCACTGTCTCTAACAACATCGTTTCTGGTCTCAAATACACAAATATTGTTTGGAAAACTGGTGTTAGAGTGGACAGCAGAAAAAAAATGTTGGGCACTTTCAGCCCCCAGCAGCAACCATACATATTTGAATTGGAAGAGGAAACTATCCCTTCTGGCATTTTTGTTAGGGGAACCTATGCAGCTAGAACTAAGTTTGTAGATGATGATGGAAAATGCTACTTGGATGTCACTTACTACTTTGAAATTCAGAAGAATAGGGGAGCACATAAGTGA 759 0.4124 MSAAVGAVSSTTKDVPFNPHLEEEEIKNKEANNSTGREPVQLPFSDAANSDNAEEETEPEEDDDPKLESDRELDLGPQFTLKEQLEKDKDDESLRKWKEKLLGSVDISTVGESKDPEVKVLSLTITYSNRPDLILPIPFTNDPKKSLFILKEGTQCRMKFTFTVSNNIVSGLKYTNIVWKTGVRVDSRKKMLGTFSPQQQPYIFELEEETIPSGIFVRGTYAARTKFVDDDGKCYLDVTYYFEIQKNRGAHK. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01615 252 SUPERFAMILY E set domains 54 247 IPR014756 -
Seca6g01615 252 Gene3D Coagulation Factor XIII, subunit A, domain 1 71 249 IPR024792 -
Seca6g01615 252 PRINTS RHO protein GDP dissociation inhibitor signature 108 123 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Seca6g01615 252 PRINTS RHO protein GDP dissociation inhibitor signature 168 184 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Seca6g01615 252 PRINTS RHO protein GDP dissociation inhibitor signature 227 244 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Seca6g01615 252 PRINTS RHO protein GDP dissociation inhibitor signature 185 200 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Seca6g01615 252 MobiDBLite consensus disorder prediction 1 79 - -
Seca6g01615 252 Pfam RHO protein GDP dissociation inhibitor 61 247 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Seca6g01615 252 MobiDBLite consensus disorder prediction 1 16 - -
Seca6g01615 252 MobiDBLite consensus disorder prediction 17 32 - -
Seca6g01615 252 PANTHER RHO GDP-DISSOCIATION INHIBITOR 54 247 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Seca6g01615 252 FunFam Rho GDP-dissociation inhibitor 1 71 250 - -
Seca6g01615 252 MobiDBLite consensus disorder prediction 33 50 - -
Seca6g01615 252 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01615 Seca-Chr6 69041260 69044039 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01615 K12462 - gmx:100797593 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01615 6 69041260 69044039 Seca12g05733 12 149029585 149031891 PCT