Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00814 ATGGCCTCTGCATCAGCATCTCTGCTCAAATCATCTCCTGTTCTTGACAAGTCTGAATGGGTGAAGGGCCAAACCCTCCGCCAAACTTCTGTATCTGTTGTGAGATGCAACCCCACGAACCCATCGGCGTTCACCATCAGAGCTGGCTCCTATGCTGATGAGCTTGTTAAGACCGCGAAAGCAGTTGCTTCACCAGGGCGTGGCATTTTGGCCATGGATGAGTCCAATGCTACTTGTGGGAAGCGTTTGGCTTCAATTGGGTTAGAGAACACCGAAATTAACCGCCAGGCATACCGTACCCTCCTTGTCACAGCTCCAGGCCTTGGTCAGTACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACAACTGATGGAAGAAAGATTGTTGATGTACTTGTTGAGCAAAACATTGTTCCCGGTATTAAAGTTGACAAGGGTTTGGTGCCCTTAGCTGGTTCCAACGATGAGTCATGGTGCCAAGGTTTGGACGGTCTTGCCTCTCGCTCAGCTGCATACTATCAGCAAGGTGCCCGTTTTGCCAAATGGTTAGTGCGTACTGTTGTGAGCATCCCCAATGGTCCCTCTGCTCTGGCAGTTAAGGAAGCAGCTTGGGGTCTGGCTCGCTATGCTGCAATTACTCAGGACAACGGGCTGGTCCCAATTGTGGAGCCAGAGATCATGCTTGATGGGGATCATGGTATTGAAAGGACTTTTGAAGTAGCCCAAAAAGTTTGGGCTGAGGTTTTCTTTTACCTTGCTGAGAACAATGTTTTGTTTGAGGGTATTCTCCTCAAGCCTAGCATGGTTACTCCTGGTGCTGAATGCAAGGAGAAGGCCTCTCCTAAGCAGGTTGCTGAATACACTCTCAGCCTCATTCACAGGAGAATTCCCCCTGCTGTCCCTGGAATTATGTTTTTGTCTGGTGGACAATCTGAGGTTGAAGCAACACTCAACTTGAATGCCATGAACCAGTCTCCAAACCCATGGCATGTGTCCTTCTCATATGCCAGAGCTCTTCAAAATACTTGCTTGAAGACATGGGGAGGTCGTCCAGAGAACGTGAAGGCAGCACAAGAGGCACTCCTTTTCCGTGCAAAGTCCAATTCACTTGCTCAGCTTGGGAAGTACACTGGTGAGGGTGAATCTGAGGAAGCCAAGAAGGAGTTGTTCGTTAAAGGTTACTCCTATTAA 1203 0.4879 MASASASLLKSSPVLDKSEWVKGQTLRQTSVSVVRCNPTNPSAFTIRAGSYADELVKTAKAVASPGRGILAMDESNATCGKRLASIGLENTEINRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGRKIVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWLVRTVVSIPNGPSALAVKEAAWGLARYAAITQDNGLVPIVEPEIMLDGDHGIERTFEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAECKEKASPKQVAEYTLSLIHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQEALLFRAKSNSLAQLGKYTGEGESEEAKKELFVKGYSY. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00814 400 Gene3D Aldolase class I 33 399 IPR013785 -
Seca6g00814 400 CDD FBP_aldolase_I_a 52 380 - -
Seca6g00814 400 NCBIfam fructose-bisphosphate aldolase class I 54 376 - -
Seca6g00814 400 FunFam Fructose-bisphosphate aldolase 36 399 - -
Seca6g00814 400 Pfam Fructose-bisphosphate aldolase class-I 54 400 IPR000741 GO:0004332|GO:0006096
Seca6g00814 400 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 261 271 IPR029768 -
Seca6g00814 400 SUPERFAMILY Aldolase 44 400 - -
Seca6g00814 400 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 49 400 IPR000741 GO:0004332|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00814 Seca-Chr6 27783474 27787252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00814 42 400 Miscellaneous Gene Families AT3G52930 55.372 5.78e-134 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00814 K01623 - gmx:100775844 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00814 6 27783474 27787252 Seca6g00814 6 27783474 27787252 ECH
Seca4g00139 4 2093947 2096565 Seca6g00814 6 27783474 27787252 ECH