Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00139 ATGGCCTCTGCATCTGCAACTCTTCTCAAGTCATCCCCTGTTCTTGACAAGTCTGAATGGGTGAAGGGTCAGTCCCTCCGCCAGCCTTCAGCATCAGTTGTAAGATGCAATCCCACCACCCCATCAGCCCTCACCATCAAAGCTGGTTCCTATGCTGATGAGCTCGTCAAGACCGCGAAAACAGTGGCCTCACCAGGGCGTGGTATTTTGGCTATGGATGAGTCAAATGCTACCTGTGGGAAGCGTTTGGCCTCTATTGGGTTAGAGAACACTGAGGCTAACCGCCAGGCATACCGTACCCTCCTGGTGACAGTTCCTGGTCTTGGTGACTACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACAGTTGATGGCAAGAAGATCGTTGATGTTCTTGTTGAGCAGAAGATTGTTCCTGGTATTAAGGTCGACAAGGGTTTGGTGCCCCTGGCTGGTTCCAATGATGAGTCATGGTGCCAAGGTCTGGATGGTCTTGCCTCTCGCTCAGCTGCATACTACCAGCAAGGTGCCCGTTTTGCCAAATGGCGTACTGTTGTGAGCATCCCCAATGGTCCCTCTGCTCTAGCAGTCAAGGAAGCAGCCTGGGGTCTGGCTCGCTATGCTGCCATTTCACAGGACAATGGGTTGGTCCCAATCGTTGAGCCAGAGATTTTGCTTGATGGTGAGCACAACATTGACAGGACTTTTGAAGTAGCCCAAAAGGTCTGGGCTGAGGTTTTCTTCTACCTAGCTGAGAACAATGTCCTCTTCGAGGGTATTCTTCTCAAGCCTAGTATGGTTACTCCAGGAGCTGAGTCCAAGGAGAAGGCCACTCCTCAGCAAGTTGCTGACTACACCCTCAAGCTCCTTCACAGGAGAATCCCCCCTGCTGTCCCTGGAATTATGGTAATTTTTGTCTGGTGGACAATCTGA 945 0.5111 MASASATLLKSSPVLDKSEWVKGQSLRQPSASVVRCNPTTPSALTIKAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGDYISGAILFEETLYQSTVDGKKIVDVLVEQKIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHNIDRTFEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAESKEKATPQQVADYTLKLLHRRIPPAVPGIMVIFVWWTI. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00139 314 Gene3D Aldolase class I 33 309 IPR013785 -
Seca4g00139 314 Pfam Fructose-bisphosphate aldolase class-I 54 307 IPR000741 GO:0004332|GO:0006096
Seca4g00139 314 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 48 307 IPR000741 GO:0004332|GO:0006096
Seca4g00139 314 NCBIfam fructose-bisphosphate aldolase class I 54 306 - -
Seca4g00139 314 SUPERFAMILY Aldolase 45 307 - -
Seca4g00139 314 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 259 269 IPR029768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00139 Seca-Chr4 2093947 2096565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00139 42 308 Miscellaneous Gene Families AT3G52930 54.104 3.22e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00139 K01623 - gmx:100775844 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00139 4 2093947 2096565 Seca4g00139 4 2093947 2096565 ECH
Seca4g00139 4 2093947 2096565 Seca6g00814 6 27783474 27787252 ECH