Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11984 ATGGAGGCCTTGCAGTTGCAACGTGTGCTTCCCATATCTGTTGCCCAAAACACTCTCTTTCCGCGCCCAACTGCCACCACCGCATTATCTGGAGTTGCAAATGCAAGGCCACCATTGGGTTTGGGTTTGAGCTTAGCATCTTCTCAAAATGGCACTGGCACTGGCACTGGCACTGCCAGAGCAGGGTGGTTTTTGGGTCTTACAGATAACAAGAAGATGAAGTTGCCTGACACTGTGAAAGCGGGTGACCCAGTTCTGCATGAGCCTGCTCAGGAAGTTGATCCCAATGAGATAAGGTCGGAGAGAGTGCAGAAGATCATTGATGACATGATCAGGGTCATGAGGAAGGCTCCTGGTGTTGGTCTAGCTGCTCCCCAGATTGGAGTTCCTTTGAGGATAATTGTTTTAGAAGATACCAAAGAATATATTAGTTATGTCCCAAAGGAAGAGACCAAAGCTCAAGATAGACGACCTTTTGATCTTTTGGTGATCGTGAATCCCAAACTAGAGAAGAAGAGCAACAGGACTGCCGTATTTTTTGAAGGGTGCTTGAGTGTTGATGGATTTAGAGCTGTGGTGGAGAGATACCTTGATGTTGAGGTTACAGGTTTGGATCGTGATGGTGTACCAATCAAAATAACTGCTTCTGGTTGGCAGGCCCGGATTTTACAACATGAGTGTGATCACTTGGATGGAACTCTATATGTTGATAAGATGGTACCTAGAACTTTCAGAACTGTAGACAATATGGACCTGCCTCTTGCCCAGGGGTGCCCCAAACTTGGCCCTTGCCACCCTGCGATTCCTTGA 810 0.4716 MEALQLQRVLPISVAQNTLFPRPTATTALSGVANARPPLGLGLSLASSQNGTGTGTGTARAGWFLGLTDNKKMKLPDTVKAGDPVLHEPAQEVDPNEIRSERVQKIIDDMIRVMRKAPGVGLAAPQIGVPLRIIVLEDTKEYISYVPKEETKAQDRRPFDLLVIVNPKLEKKSNRTAVFFEGCLSVDGFRAVVERYLDVEVTGLDRDGVPIKITASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNMDLPLAQGCPKLGPCHPAIP. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11984 269 NCBIfam peptide deformylase 79 241 IPR023635 GO:0042586
Seca4g11984 269 Hamap Peptide deformylase [def]. 74 250 IPR023635 GO:0042586
Seca4g11984 269 Gene3D Peptide deformylase 73 266 IPR036821 -
Seca4g11984 269 PRINTS Peptide deformylase signature 108 137 IPR023635 GO:0042586
Seca4g11984 269 PRINTS Peptide deformylase signature 181 192 IPR023635 GO:0042586
Seca4g11984 269 PRINTS Peptide deformylase signature 193 211 IPR023635 GO:0042586
Seca4g11984 269 PRINTS Peptide deformylase signature 212 241 IPR023635 GO:0042586
Seca4g11984 269 CDD Pep_deformylase 79 235 IPR023635 GO:0042586
Seca4g11984 269 FunFam Peptide deformylase 75 258 - -
Seca4g11984 269 PANTHER PEPTIDE DEFORMYLASE 70 258 IPR023635 GO:0042586
Seca4g11984 269 Pfam Polypeptide deformylase 79 242 IPR023635 GO:0042586
Seca4g11984 269 SUPERFAMILY Peptide deformylase 69 247 IPR036821 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11984 Seca-Chr4 260450963 260454319 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11984 K01462 - gmx:100784292 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11984 4 260450963 260454319 Seca4g11984 4 260450963 260454319 ECH
Seca4g11984 4 260450963 260454319 Seca4g08474 4 202115466 202119776 PCT