Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08474 ATGGGGACAGTGCAGCGTTTGGCGCTGCGTTTTCGTCCGGTTCCGATTCTCGTTTTCGCAAACGGCGTCATAACACCCTCAGAAGCTTTTGACAGCAGCACCGCCAGAAGCGGAATCTCAGCATTGAGGACGAAATGGATCAGTTTCAGTTCAGCAGCATCATATTCATCTTCGTCTTCACCAATGGCAGGACGGTGGTTAGCGGGTCTTGGAGGGAACAAAAAAGTGAAGTTGCCCAAGATTGTGAAAGCTGGAGACCCCGTTCTTCACCAGCCTGCCCAAGAAGTTAATCGCAGTGAGATTAAGTCAGAGAGAGTGCAGAAGATCATTGATGACATGATCATGGTCATGAGAAAAGCACCTGGGGTTGGTCTGGCTGCTCCACAGATTGGAATTCCCTTGAGGATAATTGTTTTGGAAGATACAAAAGAATATATTGGATACGACTTAGAGGAAGAGGTCAAAGCACAAGATAGAAGACCTTTTGATCTTCTGGTGATCCTGAATCCCAAGCTAAAGAAGAAGAGCAACAGGACTGCCCTATTTTTTGAAGGGTGCTTGAGTGTCACTGGATTTCTAGCTGTAGTAGAGCGGTACCTTGATGTAGAGGTTACAGGTTTTGATCGTTATGGTGAACCCATCAAAATAAATGCTTCAGGCTGGCAGGCCCGGATTTTACAACATGAATGTGATCACCTAGATGGAACACTTTATGTTGATAAGATGTTACCTAAAACTTTCAGAACTTCAGAAAACGTGGATCTGCCTCTTGCCCATGGATGCCCTAAACTTGGTCCCCGCTAA 804 0.4577 MGTVQRLALRFRPVPILVFANGVITPSEAFDSSTARSGISALRTKWISFSSAASYSSSSSPMAGRWLAGLGGNKKVKLPKIVKAGDPVLHQPAQEVNRSEIKSERVQKIIDDMIMVMRKAPGVGLAAPQIGIPLRIIVLEDTKEYIGYDLEEEVKAQDRRPFDLLVILNPKLKKKSNRTALFFEGCLSVTGFLAVVERYLDVEVTGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMLPKTFRTSENVDLPLAHGCPKLGPR. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08474 267 FunFam Peptide deformylase 78 261 - -
Seca4g08474 267 NCBIfam peptide deformylase 80 246 IPR023635 GO:0042586
Seca4g08474 267 Hamap Peptide deformylase [def]. 77 253 IPR023635 GO:0042586
Seca4g08474 267 SUPERFAMILY Peptide deformylase 77 248 IPR036821 -
Seca4g08474 267 PRINTS Peptide deformylase signature 111 140 IPR023635 GO:0042586
Seca4g08474 267 PRINTS Peptide deformylase signature 196 214 IPR023635 GO:0042586
Seca4g08474 267 PRINTS Peptide deformylase signature 184 195 IPR023635 GO:0042586
Seca4g08474 267 PRINTS Peptide deformylase signature 215 244 IPR023635 GO:0042586
Seca4g08474 267 Pfam Polypeptide deformylase 80 244 IPR023635 GO:0042586
Seca4g08474 267 Gene3D Peptide deformylase 76 265 IPR036821 -
Seca4g08474 267 PANTHER PEPTIDE DEFORMYLASE 75 257 IPR023635 GO:0042586
Seca4g08474 267 CDD Pep_deformylase 81 238 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08474 Seca-Chr4 202115466 202119776 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08474 K01462 - qsu:112029399 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08474 4 202115466 202119776 Seca4g08474 4 202115466 202119776 ECH
Seca4g11984 4 260450963 260454319 Seca4g08474 4 202115466 202119776 PCT