Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11938 ATGGCCAAGTCTTTTGAAGTTACTGAGTTACCTGTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGACATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTTCTGTCATCTTCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGCTGGATCTGTACCCAGATATTTGAGGGACATTCCCATTATGTCATGCAAGTGACGTTTAATCCTAAAGACACAAACACTTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGATCCTAATTTTACATTGGATGCCCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGACTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACATAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCAATAATCATTACTGGATCTGAGGATGGTACAGTGCGCATTTGGCATTCAACAACTTATAGGCTGGAGAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACCTGAAGGGTTCACGTCGGGTTGTCATTGGCTATGACGAAGGAACTATTATGGTCAAACTTGGTCGAGAAGAACCTGTAGCCAGCATGGACAACAGTGGGAAAATCATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGTGAATATATTATATACACTGCTTTGGCATGGAGGAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCGGATGGAGAGTATGCTGTAAGAGAAAGTACATCCAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAAGAGTATCCGGCCAACTTTTTCAGCTGAACGGATATTTGGTGGCACTGTTTTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGCATTGATGTTAATGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTAGTGACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCATATTTAGATAGCGGAAGCCCAGTAGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAATGAACGTGTCAGGACAGGGATATGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTGTATTTGATAGACAAAGAGTTCAATGTTATGGGATACACACTGCTTTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCTTCAATTCCAAAAGAGCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGATTACAGATTTGATCTAGCCATACAGCTTGGACAATTAGAAGTTGCAAAGGGTATTGCTACAGAAGTGCAGAGTGAATCTAAATGGAAGCAGCTGGGAGAGTTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTTTAAAATATGCTATGGATTTGAGTGGATTGTTGCTACTATATTCTTCTTTAGGAGATGCTGAAGGCATATCAAAACTAGCAACTCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAACTGTTGGTAGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCTTATCTCCCAAGCAAGGTCTCAGAGATAGTGGCAATATGGAGAAAAGATCTCAGTAAGGTTAATCCAAAGGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCGAATTTGTTTGAAGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGCAGAAACAAGGGGTGTTTACCCTTCTGCGGAGGATTATGTCAACCATGCTGATAAATCACATGTCACCCTAGTTGAAGCTTTCAGAAACCTGCAGATTGAAGAAGGGGAGCAGCCTCTTGAGAATGGAGACTCTAATCATGAGTTGACTGAACAAAATGGAGAGGATTATACAGAGGAACACGAGGAACAAAATGGAGAGGAAGGTAGCCAAGAGGAAGCAGTTGTAGTGGATGCCGATTCTACTGATGGTGCAGTCATCATTAATGGTAACGAGGCTGATGAAGAGTGGGGTACGGATAATAAAGGAGCCCCGTCAGCATAA 2616 0.4144 MAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASYLDSGSPVDEQGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGQLEVAKGIATEVQSESKWKQLGELAMSTGKLEMAEECLKYAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETRGVYPSAEDYVNHADKSHVTLVEAFRNLQIEEGEQPLENGDSNHELTEQNGEDYTEEHEEQNGEEGSQEEAVVVDADSTDGAVIINGNEADEEWGTDNKGAPSA. 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11938 871 PRINTS G protein beta WD-40 repeat signature 110 124 IPR020472 -
Seca4g11938 871 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Seca4g11938 871 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Seca4g11938 871 MobiDBLite consensus disorder prediction 800 871 - -
Seca4g11938 871 CDD Coatomer_WDAD_beta-like 256 731 - -
Seca4g11938 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 90 132 IPR001680 GO:0005515
Seca4g11938 871 Pfam Coatomer WD associated region 271 715 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Seca4g11938 871 Pfam WD domain, G-beta repeat 172 208 IPR001680 GO:0005515
Seca4g11938 871 Pfam WD domain, G-beta repeat 43 79 IPR001680 GO:0005515
Seca4g11938 871 Pfam WD domain, G-beta repeat 129 167 IPR001680 GO:0005515
Seca4g11938 871 Pfam WD domain, G-beta repeat 86 123 IPR001680 GO:0005515
Seca4g11938 871 MobiDBLite consensus disorder prediction 804 818 - -
Seca4g11938 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Seca4g11938 871 Gene3D - 542 750 - -
Seca4g11938 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 79 IPR001680 GO:0005515
Seca4g11938 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 90 124 - -
Seca4g11938 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 208 - -
Seca4g11938 871 SUPERFAMILY WD40 repeat-like 5 249 IPR036322 GO:0005515
Seca4g11938 871 CDD WD40 9 249 - -
Seca4g11938 871 SMART WD40_4 126 167 IPR001680 GO:0005515
Seca4g11938 871 SMART WD40_4 40 79 IPR001680 GO:0005515
Seca4g11938 871 SMART WD40_4 170 209 IPR001680 GO:0005515
Seca4g11938 871 SMART WD40_4 3 37 IPR001680 GO:0005515
Seca4g11938 871 SMART WD40_4 83 123 IPR001680 GO:0005515
Seca4g11938 871 PIRSF Beta'-COP 1 844 IPR016453 -
Seca4g11938 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 170 - -
Seca4g11938 871 SUPERFAMILY WD40 repeat-like 179 446 IPR036322 GO:0005515
Seca4g11938 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 176 IPR001680 GO:0005515
Seca4g11938 871 FunFam Coatomer subunit beta 542 750 - -
Seca4g11938 871 MobiDBLite consensus disorder prediction 819 833 - -
Seca4g11938 871 FunFam Coatomer subunit beta 1 252 - -
Seca4g11938 871 Gene3D - 1 252 IPR015943 GO:0005515
Seca4g11938 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 79 - -
Seca4g11938 871 PANTHER COATOMER 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11938 Seca-Chr4 259956082 259966510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11938 12 319 Miscellaneous Gene Families AT5G08390 23.188 1.65e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11938 K17302 - gmx:100797508 1676.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11938 4 259956082 259966510 Seca4g11938 4 259956082 259966510 ECH
Seca4g11938 4 259956082 259966510 Seca4g08601 4 205002197 205013239 PCT