Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08601 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCACAAAGATCAGAAAGAGTAAAATGTGTGGATCTACATCCAACAGAACCATGGATTCTGGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCATTTGAGGTTACTGAGTTACCAGTTAGATCAGCCAAGTTTGTTGCACGCAAACAGTGGGTTGTTGCTGGGGCAGATGATATGTTCATTCGTGTATATAATTACAACACAATGGATAAAATCAAAGTATTTGAAGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCCACACTTCCTTATGTGCTGTCATCATCTGATGATATGCTCATAAAACTTTGGGATTGGGAAAAAGGCTGGGTTTGTACCCAGATATTTGAAGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCACCTGACCCTAATTTTACATTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTATCTAATCACTGGTTCTGATGATCACACAGCCAAGGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTGTCTGCCGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCACTCAACAACTTATAGGCTTGAAAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACTTGAAGGGTTCACGTCGGGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGATAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGCAGATGTGGAGGTTGCTGATGGAGAGAGGTTGCCTTTGGCTGTTAAGGAGTTGGGTACTTGTGATCTCTACCCACAGAATTTAAAACACAATCCTAATGGGAGGTTCGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCCGCGCTAGAATTTGTTTGGTCTTTGGATGGAGAGTATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAGGAGTGTTCGACCAACATTTTCAGCTGAACGGATATTTGGTGGCACTTTACTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAAACCTCTACTGGGCTGATAGCGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCACATTTAGATAGTGGAAGACCCGTAGACGAGGAAGGTGTTGAAGATGCTTTTGAGCTCCTTCATGAAATGAATGAACGTGTCAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTCCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGGGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTAGAAAGGGCCAATGAAGTTCTACCATCAATTCCTAAAGAGCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGATTTGATCTAGCAATACAGCTTGGAAAATTAGATATTGCAAAAAGCATTGCAACAGAAGTTCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGAAAGCTAGAAATGGCTGAGGAATGTTTAAAGCATGCAACAGATTTGAGTGGGTTGTTACTACTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAACCCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTATTGGTAGAAAGCAATCGGATTCCTGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTAAATAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCAAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGCAGAAACAAGGAATGTTTACCCTCCTGCAGAGCAGTACATCAACCATGCTGACAAAGCACATCTTACCCTTGTGGAAGCTTTCAGAAACATGCAAATTGAAGGAGAGGAGCCTCTTGAGAATGGGGACTCTAATCATGAGTTGACTGAACAAAATGGAGAAGAGCACTACACAGAGGAACACAATGCAGATGAAGGAAGCCAAGAGGAGGCTGTTGTAGTGGATGCTGAATCAACAGATGGTGCAGTACTCGTTAATGGTAGCGAGGCTGACGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA 2751 0.4126 MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSIGADVEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSLDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASHLDSGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGKLDIAKSIATEVQSESKWKQLGELAMSTGKLEMAEECLKHATDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETRNVYPPAEQYINHADKAHLTLVEAFRNMQIEGEEPLENGDSNHELTEQNGEEHYTEEHNADEGSQEEAVVVDAESTDGAVLVNGSEADEEWGTNNEGAPSA. 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08601 916 FunFam Coatomer subunit beta 11 300 - -
Seca4g08601 916 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Seca4g08601 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Seca4g08601 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Seca4g08601 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Seca4g08601 916 MobiDBLite consensus disorder prediction 851 880 - -
Seca4g08601 916 PIRSF Beta'-COP 2 888 IPR016453 -
Seca4g08601 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Seca4g08601 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Seca4g08601 916 SMART WD40_4 46 85 IPR001680 GO:0005515
Seca4g08601 916 SMART WD40_4 174 215 IPR001680 GO:0005515
Seca4g08601 916 SMART WD40_4 4 43 IPR001680 GO:0005515
Seca4g08601 916 SMART WD40_4 88 127 IPR001680 GO:0005515
Seca4g08601 916 SMART WD40_4 218 257 IPR001680 GO:0005515
Seca4g08601 916 SMART WD40_4 131 171 IPR001680 GO:0005515
Seca4g08601 916 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Seca4g08601 916 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Seca4g08601 916 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Seca4g08601 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Seca4g08601 916 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Seca4g08601 916 CDD WD40 17 297 - -
Seca4g08601 916 Gene3D - 11 300 IPR015943 GO:0005515
Seca4g08601 916 PANTHER COATOMER 5 313 - -
Seca4g08601 916 MobiDBLite consensus disorder prediction 848 916 - -
Seca4g08601 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Seca4g08601 916 CDD Coatomer_WDAD_beta-like 304 779 - -
Seca4g08601 916 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Seca4g08601 916 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Seca4g08601 916 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Seca4g08601 916 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Seca4g08601 916 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Seca4g08601 916 FunFam Coatomer subunit beta 590 798 - -
Seca4g08601 916 Gene3D - 590 798 - -
Seca4g08601 916 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Seca4g08601 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08601 Seca-Chr4 205002197 205013239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08601 15 367 Miscellaneous Gene Families AT5G08390 19.890 3.61e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08601 K17302 - gmx:106794271 1798.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08601 4 205002197 205013239 Seca4g08601 4 205002197 205013239 ECH
Seca4g11938 4 259956082 259966510 Seca4g08601 4 205002197 205013239 PCT