Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11842 ATGCTTTCGTTTTCCGTTTCTCGTTTTCCTTCAAACCACTCATTGCCACTCCGCAAGCCATCACCAGCCACAAATGCAAGCTTTCGCATTGACCCGCCACAAGACCCTTATACCCCCAATTCAATTTCAACTAATACCCATGGGTCGGACCTGCAACAGAGCGCTTCTTCTTCTGGGGATGGTAAAGTTGAAGGCTTTCGAAGAGAAAAGGCGAGTGGGAGAGTGACGGGGGTGCACCCAATTCAGGGTGGTGGTGGGGTTCTCCTTGGAAGGAAGAACAAAAAGGCAAAGGAGAAAATTTACTGGGTTTGCAGCAATTGTGGATACACTGCTGGACAATGGTGGGGTGTGTGCCGATCCTGCAGTGTATCTGGCACTATGAAAGAGTTTCATGAGGCCAAATCCAGTGATGCTGATAGTAAAGTCCATGGTTTTGCGGTTTTGGAGGATGGTGTGGGGTCCTGGCTTCCACAGCAGGAAGGTGAGCTGCGTCCCTTGAGATTGGCAGAGGTAAACAGGGGACTTGATCATCTGCATTGGAGAATTCCTTTGTCTGGTCCTTTTGGAAATGAAGTTTCTAGAGTACTTGGTGGTGGCCTTGTACCAGGCTCATTGACTTTAGTTGGTGGTGATCCTGGTGTTGGGAAGAGCACCCTGTTATTGCAGATTGCCGCAATAATTGCAGAAGGGCACAATGATGGTGAAGCATCTCCAGTCCTGTATGTCTCTGGTGAAGAGAGCATTGAGCAAATTGGTAACAGAGCAGATCGCCTTAGGATTGAATCAGATATTTATTTGTATTCAAGTAATGATATTGAGGATATATTGAAGAAAGTTCAGCATCTCTCCCCTGGGGCTCTAGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTACTGCGATTTGCAAAGAAGACAAACATCCCGGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGACCTCGTGTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGAGAGAAGTACTCTTCCCATCGTATGCTTCGAGCTGTAAAAAATCGATTTGGTTCCACTGATGAGCTTGGAGTTTTTGAGATGTCCCATTCAGGACTTCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTAAGCGAGCAATATCTAGATTCACAAGTTTTAGCTGGACTAGCTGTAGCTGTAATAATGGATGGATCCCGAACATTTCTAATTGAAATTCAGGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAAGCAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCAAGAACATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACACTGGCTGAGACTGCAGGTGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGCTCCCTATTCCAAATGACATTGCATTCATAGGTGAAATTGGTCTTGGTGGTGAGCTTCGCATGGTTCCTAGAATGGAGAAAAGAGTATCCACAGTGGCGAAATTGGGTTACAGAATGTGCATAGTACCAAAGGCAGCTGAAAAAGCTTTAGGAACTGAAGATTCATTTAGGGATTCATTCTTCTCGTCACTCGTCATGTACAGAGCAGCAGCTTCATCACTCAAGAGGCATCTCAAGGGCCATGGTGGCAACTTGGGGGCTACTAGGTTTGCGACTTCAACAGCGGTGGCTACAAGGCCTTCCTCTGGTGGTTTGTTTAGCTGGCTTACTGGGGAGCGTTCTAGTTCTCTTCCTCCTCTGGACACACCACTTGGTGGTGTTGCTCTCCCTGATCCATTACCAGATTATGTTGAACCAAGCAAGACCAAGATCACAACTCTCTCCAATGGACTCAAAATAGCATCAGAGACCTCACCAGACCCTGCAGCCTCAATTGGGTTATATATTGACTGTGGTTCTATCTATGAGACACCCATGTCAAGTGGGGCTTCACACTTGCTAGAGCGAATGGCTTTCAAGAGCACTACAAACCGTAGCCACTTTCGTATTGTAAGGGAAGTAGAAGCAATTGGTGGTAATATAGGAGCCTCAGCCTCTCGGGAGCAAATGGGCTACTCATTTGATGCTTTAAAGACCTATGTGCCACAAATGGTTGAATTACTGGCTGACTGTGTAAGGAACCCAGCCTTCTTGGATTGGGAGGTCAATGAAGAGCTTCGAAAGGTGAAAGCAGAGCTTGGAGAACTCGTGAACAATCCCCAGGGCTTGCTTTTGGAAGCAATTCACTCTGCTGGTTATTCTGGTGCATTGGCTTATCCTCTTTTGGCTTCTGAATCAGCACTGAACAGATTGGATGGCCCCAGTTTAGAGGAATTTGTTGCTGAAAATTACACAGCACCTAGAATGGTACTTGCGGCATCTGGGGTTGAGCATGAAGAGCTTCTATCTGTTGCTGAGCCACTTCTCTCTGATCTCCCTAGTGTTCCCCGTCCCGAAGAACCAAAATCTGTCTATGTTGGGGGTGATTTTCGTCGTCAAGGTGAATCAGGGGGTACACATGTTGCTATTGCTTTTGAAGTGCCCGGTGGCTGGCAGAAAGAGAAAGATGCTATAGTTTTGACTGTTCTACAGATGCTTATGGGAGGAGGTGGGTCATTCTCAGCAGGGGGCCCCGGGAAAGGAATGCACTCAAGGCTATATCTTCGTGTATTGAATGAATATCAGCAGATTCAATCTTTTTCTGCATTCAACAGTATCTTCAATAATACAGGACTGTTTGGCATTTATGCAAGCACTAGCCCTGATTTTGTGCCAAAAGCTGTGGATATAGCAGCCAAAGAATTAATAGCAATTGCATCGCCTGGACAAGTTTCGCAGGTACAACTTGACCGTGCCAAAAAATCCACAAAGTCTGCAGTTTTAATGAATCTGGAATCTAGAATGATCGCATCAGAAGATATAGGAAGGCAGATTTTGACTTATGGAGAAAGGAAGCCTGTGGAGCAATTCTTGAAGGCTGTAGATGAAATAACTTTGAATGATATCACTAAAATTTCTCAGAGGATTATTTCCTCACCTTTGACTATGGCATCCTATGGGGATGTCATAAATGTGCCCAGTTATGAATCTGTGAACAGCAAGTTCCATGCAAAATGA 3219 0.4473 MLSFSVSRFPSNHSLPLRKPSPATNASFRIDPPQDPYTPNSISTNTHGSDLQQSASSSGDGKVEGFRREKASGRVTGVHPIQGGGGVLLGRKNKKAKEKIYWVCSNCGYTAGQWWGVCRSCSVSGTMKEFHEAKSSDADSKVHGFAVLEDGVGSWLPQQEGELRPLRLAEVNRGLDHLHWRIPLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAIIAEGHNDGEASPVLYVSGEESIEQIGNRADRLRIESDIYLYSSNDIEDILKKVQHLSPGALVVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQYLDSQVLAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLAETAGDLAIAAAICSSFLELPIPNDIAFIGEIGLGGELRMVPRMEKRVSTVAKLGYRMCIVPKAAEKALGTEDSFRDSFFSSLVMYRAAASSLKRHLKGHGGNLGATRFATSTAVATRPSSGGLFSWLTGERSSSLPPLDTPLGGVALPDPLPDYVEPSKTKITTLSNGLKIASETSPDPAASIGLYIDCGSIYETPMSSGASHLLERMAFKSTTNRSHFRIVREVEAIGGNIGASASREQMGYSFDALKTYVPQMVELLADCVRNPAFLDWEVNEELRKVKAELGELVNNPQGLLLEAIHSAGYSGALAYPLLASESALNRLDGPSLEEFVAENYTAPRMVLAASGVEHEELLSVAEPLLSDLPSVPRPEEPKSVYVGGDFRRQGESGGTHVAIAFEVPGGWQKEKDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYASTSPDFVPKAVDIAAKELIAIASPGQVSQVQLDRAKKSTKSAVLMNLESRMIASEDIGRQILTYGERKPVEQFLKAVDEITLNDITKISQRIISSPLTMASYGDVINVPSYESVNSKFHAK. 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11842 1072 CDD RadA_SMS_N 102 393 - -
Seca4g11842 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 385 IPR027417 -
Seca4g11842 1072 FunFam mitochondrial-processing peptidase subunit alpha 857 1065 - -
Seca4g11842 1072 SUPERFAMILY Ribosomal protein S5 domain 2-like 371 557 IPR020568 -
Seca4g11842 1072 Pfam AAA domain 195 338 - -
Seca4g11842 1072 Pfam Subunit ChlI of Mg-chelatase 456 546 - -
Seca4g11842 1072 FunFam DNA repair protein radA isogeny 409 559 - -
Seca4g11842 1072 SMART AAA_5 202 360 IPR003593 GO:0016887
Seca4g11842 1072 SUPERFAMILY LuxS/MPP-like metallohydrolase 642 852 IPR011249 GO:0046872
Seca4g11842 1072 MobiDBLite consensus disorder prediction 34 60 - -
Seca4g11842 1072 ProSiteProfiles RecA family profile 1. 181 334 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Seca4g11842 1072 NCBIfam DNA repair protein RadA 96 549 IPR004504 GO:0003684|GO:0005524|GO:0006281
Seca4g11842 1072 PRINTS DNA repair protein radA signature 364 390 - -
Seca4g11842 1072 PRINTS DNA repair protein radA signature 290 314 - -
Seca4g11842 1072 PRINTS DNA repair protein radA signature 329 357 - -
Seca4g11842 1072 PRINTS DNA repair protein radA signature 194 222 - -
Seca4g11842 1072 PRINTS DNA repair protein radA signature 104 128 - -
Seca4g11842 1072 PRINTS DNA repair protein radA signature 439 462 - -
Seca4g11842 1072 Pfam Insulinase (Peptidase family M16) 654 796 IPR011765 -
Seca4g11842 1072 Gene3D - 635 845 - -
Seca4g11842 1072 MobiDBLite consensus disorder prediction 1 87 - -
Seca4g11842 1072 FunFam Mitochondrial-processing peptidase subunit beta 633 848 - -
Seca4g11842 1072 ProSitePatterns Insulinase family, zinc-binding region signature. 673 696 IPR001431 GO:0004222|GO:0006508
Seca4g11842 1072 FunFam DNA repair protein RadA 186 391 - -
Seca4g11842 1072 Gene3D - 857 1069 - -
Seca4g11842 1072 Gene3D - 191 391 IPR027417 -
Seca4g11842 1072 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g11842 1072 Pfam Peptidase M16 inactive domain 809 988 IPR007863 -
Seca4g11842 1072 PANTHER DNA REPAIR PROTEIN RADA 44 553 - -
Seca4g11842 1072 Pfam Rubredoxin metal binding domain 102 129 IPR041166 -
Seca4g11842 1072 SUPERFAMILY LuxS/MPP-like metallohydrolase 871 1062 IPR011249 GO:0046872
Seca4g11842 1072 Gene3D - 409 563 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11842 Seca-Chr4 259037774 259056158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11842 K01412 - gmx:100794691 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11842 4 259037774 259056158 Seca4g11842 4 259037774 259056158 ECH
Seca4g11842 4 259037774 259056158 Seca4g08732 4 207909694 207922022 PCT