Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08732 ATGGCAGCATTAATAGCAGGCAGTGGTGGTGAAGCTTCTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGGTCACAGAGCAGATCGCCTTGGGATTAAATCTAATATATATTTATATTCAAGTACCGATATTGAGGATATATTGAAGAAAGCTCACTGTCTCTCCCCTCGCGCTCTGGTTGTTGATTCAATACAAACTGTTTATTTGAAATGTATAATAGGAAGTGTTGGAGGGATTGTTCAGGTGAAGGAATGTACTTCAGCTTTGATGCGATTTGCGAAAACGACTAATATCCCTGTTCTTTTGATTGGACATGTGACAAAATCTGGAGATATAGCAGGGCCTCGTGTCTTGGAACATATTGTTGATGTTGTTTTGTATATGGAAGGTGAGAGGTACACATCACATCGAATGCTTCGGGTTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGGAATTTTTAAGATGTCACAATCAGGATTCTGCGCTGTTTCAAATGCCAGTGAAATGTTTCTCACTGAGCAACACTCTGATTCAGAAGTTTTAGCTGGGTTAGCTATTACCGTAATAATGGATGGTTCAAGAACTTTCGTAATTGAAATTCAGGCACTTTGCCTTTCAAATAACTTAGTATCAGTTTCATCTGCAAAGGTAGTTAATGGGATCCCAACACACAGAGCTAATATGATCAAATGTGTTCTTATAAACCAAGCAGGTCTTCATCTCCAAGAAAATGCTGTGCATATGAATGTTGTTAGTGGATTGACACTGACAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATATGCAGCAGTTTCTTGGAGTTCCCTATTCCAAAGGGCATTGCATTCATTGGTGAAATTGGCCTTTGTGGAGAGCTTCGCATGGTTCCTAGAATTGAGAAAAGGATGCACACGTTGGCGAAGTTGGGTTACACAATTTGTGTAGTACCAAAGCAAGCTGAACAAGTTTTAGGAGCTGAAGATCTAGGAAATATGAAAGTTATAGGTTGCAAGAATCTGAAAGAGTTTATTAACGCCGTATTCAGAAGAGATAATTAA 1080 0.3972 MAALIAGSGGEASPVVYVSGEESLQQIGHRADRLGIKSNIYLYSSTDIEDILKKAHCLSPRALVVDSIQTVYLKCIIGSVGGIVQVKECTSALMRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGERYTSHRMLRVVKNRFGSTDELGIFKMSQSGFCAVSNASEMFLTEQHSDSEVLAGLAITVIMDGSRTFVIEIQALCLSNNLVSVSSAKVVNGIPTHRANMIKCVLINQAGLHLQENAVHMNVVSGLTLTETAGDLAIAAAICSSFLEFPIPKGIAFIGEIGLCGELRMVPRIEKRMHTLAKLGYTICVVPKQAEQVLGAEDLGNMKVIGCKNLKEFINAVFRRDN. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08732 359 FunFam DNA repair protein radA isogeny 185 358 - -
Seca4g08732 359 ProSiteProfiles RecA family profile 1. 1 110 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Seca4g08732 359 Gene3D - 1 165 IPR027417 -
Seca4g08732 359 PRINTS DNA repair protein radA signature 105 133 - -
Seca4g08732 359 PRINTS DNA repair protein radA signature 66 90 - -
Seca4g08732 359 PRINTS DNA repair protein radA signature 140 166 - -
Seca4g08732 359 PRINTS DNA repair protein radA signature 17 34 - -
Seca4g08732 359 PRINTS DNA repair protein radA signature 219 242 - -
Seca4g08732 359 PANTHER DNA REPAIR PROTEIN RADA 12 357 - -
Seca4g08732 359 SUPERFAMILY Ribosomal protein S5 domain 2-like 147 355 IPR020568 -
Seca4g08732 359 Pfam Subunit ChlI of Mg-chelatase 240 326 - -
Seca4g08732 359 Gene3D - 176 359 IPR014721 -
Seca4g08732 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 161 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08732 Seca-Chr4 207909694 207922022 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08732 K04485 - gmx:100791181 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08732 4 207909694 207922022 Seca4g08732 4 207909694 207922022 ECH
Seca4g11842 4 259037774 259056158 Seca4g08732 4 207909694 207922022 PCT