Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11810 ATGTTCTTCTTCAAATGCCTCCATTTGTTCATCATCATCATCATCATTGCGCATGTCTTCTCATTAACGGATTCCTCCTCCACCCCAAACCCGCTCTTTACCGACTTTCTGGACACTGCCAAGAAGCCTGAGGTTTTTGATTGGATGGTCAAAATCAGAAGGAAGATTCATGAGAATCCTGAATTAGGTTATGAAGAATTTGAGACCAGTGAACTGATTAGAGCTGAATTGGATAAATTGGGCATCCCCTATAAGCACCCAGTTGCAGTAACCGGTGTTATTGGCTTCATAGGGACTGGAAGGTCACCTTTTGCTGCAATTAGAGCTGATATGGATGCTCTTCCCATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCATGTGGTCATGATGCCCATGTTACCATGCTTCTTGGTGCTGCAAAGATTCTCAAAGAGCATGAAAAAGAGATACAAGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATACTGGAGTCTTAGAAAATGTTACTGCTATCTTTGGATTGCATGTGGCACCTAATCTTCCAATAGGTGAAGTGGCCTCCAGATCTGGTCCAATATTGGCAGGAAGTGGCTTCTTTGAAGCAATAATAAGTGGAAAGGGAGGTCATGCTGCTATTCCTCAACATTCTATAGACCCCATATTGGCAGCCTCTAATGTAATTATTAGCTTACAACACCTTGTTTCTCGTGAGGCTGATCCTCTTGACTCCCAGGTTGTAACGGTTGGAAAGTTCCAAGGAGGTGGTGCATTCAACGTTATTCCAGATTATGTCACAATTGCTGGCACCTTCCGAGCTTTTTCTAAAGAAAGCTTCCTGCAACTGAAACAGCGCATCGAGCAGGTTATCATTGGGCAAGCTGCTGTACAGAGGTGCAATGCAACTGTGAACTTCCTTGATGAAATTAAACCTTCCTATCCTCCAACTATAAATAATGGTGCCTTGCATGAGCTTTTTTGTAATGTGGCAGTGAATTTGCTTGGCATCAATAAATGTCATTTTGACAAGCAACCATCCATGGGAGCTGAAGACTTTGCATTTTATCAAGAGGTCATACCTGGCTACTTCTTCACCCTTGGAATGCAGAATTCCTCAGATGAAAGGGCTCAGTCATTACACTCACCTTATCTCCAAATCAATGAAGATGGACTTCCTTATGGGGCTGTACTTCATGCTTCATTAGCTACTAGTTATCCTGCAACATTAACAGATTCCTCCTCCACCCCCAACCACCTCATCACCAACTTTCTAGACACTGCCAAGGAACCTGAGGTTTTTGATTGGATGGTCAAAATCAGAAGAAAGATTCATGAGAATCCTGAATTAGGCTTTGAAGAATTTGAGACCAGTGAAGTGATAAGAGCAGAATTGGATGAATTAGGCATTCCCTATAATCATCCAGTAGCACTCACCGGCCTTGTTGGCTTCATAGGGACTGGAAGGCCTCCTTTTGTTGCATTAAGAGCTGATATGGATGCTCTTCCCATACAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTTCCTGGAAAGATGCATGCATGTGGTCATGATGCTCATGTTACCATGGTTCTTGGTGCTGCAAAGATTCTCAAAATGCATGAGAAAGAGATAAAAGGAACTGTTGTTCTTGTTTTCCAACCAGGAGAGGAAGGATTTGCAGGGGCTAAGAAAATTTTAGAAAGTGGAGCCTTGAAAGATGTTAATGCTATCTTTGGATTGCACGTGACACCTGAACTTCCAATAGGTGAAGTAGCCTCCAAATCTGGTCCAATATTGGCAGGAAGTGGTGTCTTTGAAGCTAAGATAAGTGGAAAGGGAGGTCATGCAGCTATTCCTCAACTTGCTATGGATCCCATAGTGGCTGCTTCTCATGTGGTTCTTAGTTTACAAAATCTTGTTTCTCGCGAGGCTGATCCGCTAGACCCCCTGGTTGTGACGGTTGGAAAGTTCCAAGGAGGCGATGCATTCAATGTTATTCCAGATTCTGTCACAATTGGTGGCACCTTCCGAGCTTTTGCTAGAGAAAGCTTCAACAATGTCAAACAGCGGATTGAGGAGGTTATCATTAAGCAAGCTGGTGTACACAGGTGCAATGCAACAGTGGACTTCTTTGATGAAGAGCATCCTTCCTATCCTCCAACCATAAATGATGGTGACTTGCATGAGCTTTTTGTTGATGTGGCAGTGGATGTGCTTGGCACCAAAAATGTTCATCTTGACATTGAAAGAGCCATGGGATCTGAAGACTTTTCATTTTATCAAGAGGTGCTACCTGGCTACTTCTTCCTGCTTGGAATGAAAAATTCATCGGATGAAAGGGCTCTGTCCTTACACTCACCTTATCTCAAAATCAATGAAGATGGATTTCCATATGGGGCTGCACTTCATGCATCATTAGCTACTAGTTATCTTCTAGATTATCCCCGTAACCTTCCCCGGGTGGAGAGGAAATTTCATGATGAATAA 2547 0.4327 MFFFKCLHLFIIIIIIAHVFSLTDSSSTPNPLFTDFLDTAKKPEVFDWMVKIRRKIHENPELGYEEFETSELIRAELDKLGIPYKHPVAVTGVIGFIGTGRSPFAAIRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKEHEKEIQGTVVLVFQPAEEGGGGAKKILDTGVLENVTAIFGLHVAPNLPIGEVASRSGPILAGSGFFEAIISGKGGHAAIPQHSIDPILAASNVIISLQHLVSREADPLDSQVVTVGKFQGGGAFNVIPDYVTIAGTFRAFSKESFLQLKQRIEQVIIGQAAVQRCNATVNFLDEIKPSYPPTINNGALHELFCNVAVNLLGINKCHFDKQPSMGAEDFAFYQEVIPGYFFTLGMQNSSDERAQSLHSPYLQINEDGLPYGAVLHASLATSYPATLTDSSSTPNHLITNFLDTAKEPEVFDWMVKIRRKIHENPELGFEEFETSEVIRAELDELGIPYNHPVALTGLVGFIGTGRPPFVALRADMDALPIQEMVEWEHKSKVPGKMHACGHDAHVTMVLGAAKILKMHEKEIKGTVVLVFQPGEEGFAGAKKILESGALKDVNAIFGLHVTPELPIGEVASKSGPILAGSGVFEAKISGKGGHAAIPQLAMDPIVAASHVVLSLQNLVSREADPLDPLVVTVGKFQGGDAFNVIPDSVTIGGTFRAFARESFNNVKQRIEEVIIKQAGVHRCNATVDFFDEEHPSYPPTINDGDLHELFVDVAVDVLGTKNVHLDIERAMGSEDFSFYQEVLPGYFFLLGMKNSSDERALSLHSPYLKINEDGFPYGAALHASLATSYLLDYPRNLPRVERKFHDE. 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11810 848 SUPERFAMILY Bacterial exopeptidase dimerisation domain 621 730 IPR036264 -
Seca4g11810 848 FunFam N-acetyldiaminopimelate deacetylase 620 738 - -
Seca4g11810 848 Pfam Peptidase family M20/M25/M40 106 421 IPR002933 GO:0016787
Seca4g11810 848 PANTHER PEPTIDASE M20 FAMILY MEMBER 28 426 IPR017439 GO:0016787
Seca4g11810 848 FunFam N-acetyldiaminopimelate deacetylase 214 332 - -
Seca4g11810 848 Pfam Peptidase dimerisation domain 621 719 IPR011650 -
Seca4g11810 848 Pfam Peptidase dimerisation domain 215 309 IPR011650 -
Seca4g11810 848 SUPERFAMILY Zn-dependent exopeptidases 450 833 - -
Seca4g11810 848 SUPERFAMILY Zn-dependent exopeptidases 44 424 - -
Seca4g11810 848 Pfam Peptidase family M20/M25/M40 512 827 IPR002933 GO:0016787
Seca4g11810 848 Gene3D - 620 738 - -
Seca4g11810 848 Gene3D - 214 332 - -
Seca4g11810 848 SUPERFAMILY Bacterial exopeptidase dimerisation domain 214 333 IPR036264 -
Seca4g11810 848 Gene3D Zn peptidases 455 814 - -
Seca4g11810 848 CDD M20_IAA_Hyd 49 424 IPR044757 GO:0009850|GO:0016787
Seca4g11810 848 NCBIfam amidohydrolase 455 817 IPR017439 GO:0016787
Seca4g11810 848 NCBIfam amidohydrolase 49 412 IPR017439 GO:0016787
Seca4g11810 848 CDD M20_IAA_Hyd 455 831 IPR044757 GO:0009850|GO:0016787
Seca4g11810 848 Gene3D Zn peptidases 49 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11810 Seca-Chr4 258651297 258666149 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11810 K21604 - gmx:121172631 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11810 4 258651297 258666149 Seca4g08746 4 208311679 208315647 PCT