Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08746 ATGGATTTCTTCAAATGGGTCAACTTGTTCATCATTTTTCATTGCTTTGCTTCAACGCCCATCTTCTCAGATTCCTCCTTCAGCTCAAATGAACACTTGGCAGTCCCAACCACCACCAAGTTTCTAGATTTAGCCAAGGAGCCTCGGGTTTTTGATTGGATGGTCAATATCAGGAGGAAGATTCATGAGAATCCAGAGTTGGGTTATGAGGAATTTGAGACCAGTGAGCTGATAAGAGCGGAATTGGATAAATTGGGCATCACATATAAACACCCAGTTGCAGTAACCGGTGTTATTGGCTTCATAGGGACTGGACTACCTCCTTTTGTTGCAATTAGAGCTGATATGGATGCTCTTCTTATGCAGGAAATGGTGGATTGGAAGCACAAAAGTAAAGTACCTGGAAAGATGCATGCATGCGGTCATGATGGTCATGTTGCTATGCTTCTCGGTGCTGCAAAGATCCTCAAGGAGCATGAAAAAGAGATACGAGGAACTGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGCAGGGGCTAAGAGAATTTTGGATGCTGGAGCCTTAGAAAGTGTCTCTGCCATATTTGGACTGCACATCGCAAACAGCTTACCTATAGGTGCAGTGGCCTCTAGGTCTGGTCATCTGTTTGCAGGAAGCGGTTTCTTTGAAGCAATAATAAGTGGCAAGGGAGGCCATGCAGCTATTCCTCAACATTCTATTGACCCCATATTAGCAGCTTCCAATGTGATAGTTAGCTTACAACATATTGTTTCTCGCGAGGCTGATCCTCTGGACTCCCAGGTTGTGACTGTAGCAAAATTTCAAGGAGGGGGTGCATTTAATGTTATTCCAGACTCTGTCACAATTGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGCTTCATGCAGCTGAGACATCGAATTGAGCAGGTTATCACTGGGCAAGCTGCTGTGCAGAGGTGTAATGCTACAGTCAGCTTCCTTGATGAAGAGAAAACTTTCTTCCCTCCAACTGTAAACAACCCTGACTTGCATGGGTTTTTTAGAACCGTTGCTGGGGATTTGCTTGGCGTGAATAAAGTTAATGACATGCAACCATTGATGGGATCTGAGGACTTTTCATTCTATCAAGAGGTTTTGCCTGGATACTTTTTCCTCCTTGGAATGGAGAATGCCTCTGTTGAACGTCTTGAGTCACCACACTCTCCCTATTTCAAAATCAATGAAGATGCACTTCCTTATGGAGCTGCACTTCATGCCTCATTAGCTACTAGGTATCTTCTCAAATTTCATCAGGATGTACCAGTAGTAGAGGGGAAACATCATGATGAATTATAA 1344 0.4368 MDFFKWVNLFIIFHCFASTPIFSDSSFSSNEHLAVPTTTKFLDLAKEPRVFDWMVNIRRKIHENPELGYEEFETSELIRAELDKLGITYKHPVAVTGVIGFIGTGLPPFVAIRADMDALLMQEMVDWKHKSKVPGKMHACGHDGHVAMLLGAAKILKEHEKEIRGTVVLVFQPAEEGGAGAKRILDAGALESVSAIFGLHIANSLPIGAVASRSGHLFAGSGFFEAIISGKGGHAAIPQHSIDPILAASNVIVSLQHIVSREADPLDSQVVTVAKFQGGGAFNVIPDSVTIGGTFRAFSKESFMQLRHRIEQVITGQAAVQRCNATVSFLDEEKTFFPPTVNNPDLHGFFRTVAGDLLGVNKVNDMQPLMGSEDFSFYQEVLPGYFFLLGMENASVERLESPHSPYFKINEDALPYGAALHASLATRYLLKFHQDVPVVEGKHHDEL. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08746 447 FunFam N-acetyldiaminopimelate deacetylase 219 337 - -
Seca4g08746 447 NCBIfam amidohydrolase 54 416 IPR017439 GO:0016787
Seca4g08746 447 SUPERFAMILY Bacterial exopeptidase dimerisation domain 219 338 IPR036264 -
Seca4g08746 447 CDD M20_IAA_Hyd 54 429 IPR044757 GO:0009850|GO:0016787
Seca4g08746 447 PIRSF Amidohydrol_AmhX 40 432 IPR017439 GO:0016787
Seca4g08746 447 Gene3D Zn peptidases 54 414 - -
Seca4g08746 447 Gene3D - 219 337 - -
Seca4g08746 447 Pfam Peptidase family M20/M25/M40 111 425 IPR002933 GO:0016787
Seca4g08746 447 SUPERFAMILY Zn-dependent exopeptidases 50 430 - -
Seca4g08746 447 Pfam Peptidase dimerisation domain 220 316 IPR011650 -
Seca4g08746 447 PANTHER PEPTIDASE M20 FAMILY MEMBER 36 434 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08746 Seca-Chr4 208311679 208315647 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08746 K21604 - gmx:100794121 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08746 4 208311679 208315647 Seca4g08746 4 208311679 208315647 ECH
Seca4g11810 4 258651297 258666149 Seca4g08746 4 208311679 208315647 PCT