Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11792 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCGCAACCGCTGGAATGGAAATTCTCGCAGGTTTTCGGCGAACGTACGGCTGGTGAAGAAGTTCAAGAAGCCAATTTTCTTTCTACAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACGGGTGATCGAGGTGGTCGAGTAGTTCTCTTTGAGCGCACAGATACAAAAGATCATCGCGGATCAAGAAGGGAGATGGAGAGGATGGACTATTCTATTAGCAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAGATCAAATGGTGCCAAACAGCTAATGGTGCTCTGTTCCTGTTATCTACAAATGATAAAACAATCAAGTTTTGGAAGGTTCAAGAAAAGAAGATCAAGAAAATTTCTGACATGAATATTGATCCTTCAAAAGCAATTGGAAATGGTTCTATTGCTAGTTCAAGTAATTCCAGTAGCTCTAGACCATATCTTGCAAATGGAGGATCTTCAGATAGATCTTACAGTTATCTAAGCAATGATTTCTCATTTCCACCAGGAGGCATTCCTTCGCTAAGATTACCCTTGGTAGTAACCGGCCATGAGACCAGTCTGGTGGCTCGATGTCGTAGAGTATATGCACATGCTCATGATTATCATATCAATTCCATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTGCGTATAAATCTTTGGAACCTGGAAATTAGCAACCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCATCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTATTGACTTGCGGCAGTCAGCCTTGTGTGATTCTCATGCTAAACTATTTGAGGAACAGGAGGCCCCTGGGTCCAGATCATTTTTTACAGAGATTATCGCTTCTATCTCAGACATAAAATTTGGAAAGGATGGAAGATATATACTTAGTCGTGATTATATGACTCTAAAGTTATGGGACATAAATATGGATTCTGGCCCAGTTGCAACTTTCCAGGTTCACGAGTATTTGAGGCCAAAGCTTTGTGATTTATACGAAAATGATTCAATTTTTGATAAGTTCGAGTGTTGTCTGAGTGGGGACGGATTGCGTGTTTCAACTGGTTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTTCCCCGGGAAGTACCGAGGCTACAACTTTAGAGGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACACCTGCAAGGCCTTCTAGATCATTGGGGAACAGTATAACAAGAGTTGTAAGACGTGGAGCTGAAAGCACTGGTGTTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAAGTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCATGA 1569 0.4092 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEANFLSTVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHRGSRREMERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKIKKISDMNIDPSKAIGNGSIASSSNSSSSRPYLANGGSSDRSYSYLSNDFSFPPGGIPSLRLPLVVTGHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCSPGSTEATTLEASKNPMRRQVPTPARPSRSLGNSITRVVRRGAESTGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11792 522 SUPERFAMILY WD40 repeat-like 43 514 IPR036322 GO:0005515
Seca4g11792 522 Gene3D - 227 519 IPR015943 GO:0005515
Seca4g11792 522 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 42 203 - -
Seca4g11792 522 MobiDBLite consensus disorder prediction 451 470 - -
Seca4g11792 522 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 239 253 IPR018067 -
Seca4g11792 522 Pfam WD domain, G-beta repeat 233 269 IPR001680 GO:0005515
Seca4g11792 522 PIRSF PPA2_B55 11 522 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 522 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 354 381 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 269 296 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 297 325 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 326 353 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 491 520 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 51 71 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 127 155 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 98 126 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 382 407 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 241 268 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 408 434 IPR000009 GO:0000159|GO:0019888
Seca4g11792 522 Gene3D - 42 226 IPR015943 GO:0005515
Seca4g11792 522 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 215 518 - -
Seca4g11792 522 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 111 125 IPR018067 -
Seca4g11792 522 SMART WD40_4 339 377 IPR001680 GO:0005515
Seca4g11792 522 SMART WD40_4 111 151 IPR001680 GO:0005515
Seca4g11792 522 SMART WD40_4 230 269 IPR001680 GO:0005515
Seca4g11792 522 SMART WD40_4 280 320 IPR001680 GO:0005515
Seca4g11792 522 SMART WD40_4 33 72 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11792 Seca-Chr4 258443992 258452656 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11792 K04354 - gmx:100799449 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08765 4 208555942 208563996 Seca4g11792 4 258443992 258452656 ECH
Seca4g11792 4 258443992 258452656 Seca4g11792 4 258443992 258452656 ECH
Seca4g11792 4 258443992 258452656 Seca4g08765 4 208555942 208563996 PCT