Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08765 ATGAACGGTGGCGATGAGGTTGTCGCAGCTCCGGCGGGTCCACCGCACCCTCTGGAGTGGAAATTCTCTCAGGTGTTCGGTGAACGCACGGCAGGGGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCCACTGGTGATCGTGGTGGTCGAGTGGTTCTCTTTGAGAGGACAGATGCAAAAGATTATGGCGGATCAAGAAGGGATTTGGAGAGGATGGACTATGTAATTAGCAGACATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCTGAGTTTGACTATCTTAAGAGCTTGGAGATAGAAGAGAAAATCAACAAAATTAGATGGTGCCAAACAGCTAATGGTTCCCTTTTTCTTCTCTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAGAAGAAGGTCAAGAAAATTACTGAGATGAATGTTGACCCTTCAAAAGCAATGGGAAATGGTCCTATTGCTAGCTCAAGTAATTCAAGTAGCTCTAGGCCATATCTTGCTAATGGAGTATCTCCAGAGATATCATACGATTATCCAAGTAATGACAATCCGTTTCCAGCAGGAAGCATAGCAGCACTAAGATTTCCCATGGTAGTAAGTAGCCATGAAACCAGCTTGGTGGCTCGATGTCGTAGAGTATATGCTCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGTGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATCGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATATGTTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCAGGCTCCAGATCATTTTTCACAGAGATAATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTTAGCCGTGATTACATGACTTTAAAGTTATGGGACATTAATATGGATTCAGGCCCTGTTGCAACTTTCCAGGTTCATGAATATTTAAGACCTAAGCTTTGTGATTTATATGAAAATGATTCAATTTTTGACAAGTTTGAGTGTTGCCTGAGTGGTGATGGATTGCGGATAGCAACTGGTTCTTACAGCAATCTATTCCGTGTATTTGGTTGTGCCCCTGGAAGTGCTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCCATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCTAGATCACTGGGAAATAGTATAACACGAGTTGTAAGACGGGGAGCAGAAAACTCCGGGGTTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAACTGAAAACTCAATTGCTTGTGCTGCTGCTAATAGCTTGTACATGTACTATGCGTAA 1551 0.4152 MNGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKDYGGSRRDLERMDYVISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGSLFLLSTNDKTIKFWKVQEKKVKKITEMNVDPSKAMGNGPIASSSNSSSSRPYLANGVSPEISYDYPSNDNPFPAGSIAALRFPMVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRIATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAENSGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08765 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Seca4g08765 516 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Seca4g08765 516 PIRSF PPA2_B55 12 516 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 197 - -
Seca4g08765 516 MobiDBLite consensus disorder prediction 167 182 - -
Seca4g08765 516 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 209 512 - -
Seca4g08765 516 SUPERFAMILY WD40 repeat-like 39 508 IPR036322 GO:0005515
Seca4g08765 516 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 516 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 Gene3D - 84 514 IPR015943 GO:0005515
Seca4g08765 516 SMART WD40_4 333 371 IPR001680 GO:0005515
Seca4g08765 516 SMART WD40_4 375 429 IPR001680 GO:0005515
Seca4g08765 516 SMART WD40_4 224 263 IPR001680 GO:0005515
Seca4g08765 516 SMART WD40_4 274 314 IPR001680 GO:0005515
Seca4g08765 516 SMART WD40_4 105 145 IPR001680 GO:0005515
Seca4g08765 516 SMART WD40_4 31 66 IPR001680 GO:0005515
Seca4g08765 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 233 247 IPR018067 -
Seca4g08765 516 MobiDBLite consensus disorder prediction 163 182 - -
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 375 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 402 428 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 485 514 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 319 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 401 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 290 IPR000009 GO:0000159|GO:0019888
Seca4g08765 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08765 Seca-Chr4 208555942 208563996 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08765 K04354 - gmx:100799449 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08765 4 208555942 208563996 Seca4g11792 4 258443992 258452656 ECH
Seca4g08765 4 208555942 208563996 Seca4g08765 4 208555942 208563996 ECH
Seca4g11792 4 258443992 258452656 Seca4g08765 4 208555942 208563996 PCT