Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11773 ATGGCTCGGGAACTTCCTACCTCCTTGTCAAGTGTCCTTTTGCATCTCAATTTTTTATTAGCTAATGGCATCTGGGTTCTACCTGTGTTTCTGGAAAGTTACAATTTAGGTAGGCAGAACTGGCATGAAAATGGGTACCCTTTTATCAAGAAAGCAAGCTCATTCTCATCACCATCAATTTCAACTACCTCACACAATAATGCTTATGACTACATAATAGTGGGGGGTGGCACAGCAGGGTGTCCCTTGGCTGCAACACTCTCTCAGAACTTTAGTGTCCTGCTACTTGAAAGAGGGGGTGTTCCTTTCACCAACCCCAATGTCTCATTTCTAGCAAACTTCCACATTACCTTGGCAGACACTTCACCAACTTCAGCTTCCCAATACTTCATTTCAACAGATGGAGTTTTCAATGCAAGAGCAAGGGTCCTTGGTGGTGGTACTTCTATCAATGCTGGCTTCTATACAAGAGCAAGCTCAAGGTTTATACAAAAGGTAGGGTGGGATGCTGAGCTAGTAAATAAGTCTTACCCATGGGTTGAGAAGCAAATTGTTCACCGTCCAAACTTCTCAGGTTATCAGAGAGCAGTGAGAGACAGCCTTCTAGATTCTGGCGTGTCTCCTTTTAATGGCTTCACCTATGATCATATCTATGGAACCAAGGTTGGTGGAACCATTTTTGACAGATTTGGCCGCCGCCACACAGCTGCTGAATTGCTTGCCTCTGGGAACCCTGACAAACTTACTGTTTTGGTCCATGCCACTGTCCAAAAGATTGTTTTTGATACAAGAGGTAAAAGACCAAAAGCTGTGGGGGTTATTTTCCAGGATGAAAATGGGAAACAGCATGAGGCACTTCTGGGAAATGATAGGCAAAGTGAAGTGATAGTGTCTAGTGGGGCAATTGGGACTCCTCAATTGCTAATGCTTAGTGGAATTGGACCAAAAGCTGAACTTCAGAACTTAAACATCTCAGTGGTCCTTGACAATCCATTTGTTGGGAAAGGAATGGTAGATAATCCCATGAACACAATTTTTGTTCCTTCTAATAGGCCAGTTTATCAGTCACTCATTGAAACTGTGGGTATCACCAAGCTGGGTGTGTACATTGAGGCTAGCAGTGGGTTTAGTCAGTCCAACAATAGCATTCACTGCCACCATGGTATCTTGTCAGCTGAGATTGGACAGCTTTCCACAATTCCTCCCAAGCAAAGATCAATAGAAGCTGTTAAAGCTTTTGTCAAGAACAAGAGAGACATACCAGTTGAAGCATTCAGGGGAGGCTTTATCTTGTCAAAAGTTTCCAATCCTTGGTCAGCAGGTGACCTCAAGTTGATCAACACCAATGTGGAAGACAACCCTGCTGTTACTTTCAACTACTTTAGCAATCCAAATGATCTTCAGCGCTGTGTTGAGGGTATCCAATTGGCAACTAAGGTAGTCCAGTCAGAACACTTCACAAACTACACCATGTGTAACAGAAAAACCACAGAGAAATTGCTTAACCTTACTTTGAAGGCTAATGTCAACCTCATACCCAAACATGGCAATGACACAAAGTCCTTAGAGCAGTTCTGCAGAGACACTGTGATCACAATTTGGCACTACCATGGTGGGTGCCATGTGGGGAAGGTAGTTAGCCCTGACTATAAGGTTCTTGGTGTTGACAGACTCCGTGTTGTAGATGGCTCAACATTTCCTGAATCACCAGGAACAAATCCTCAAGCCACTGTGATGATGATGGGCAGGTACATGGGAGTGAAGATTTTGAGAGATAGGTTGGGGAAATTGGCTGGTATATAA 1803 0.4365 MARELPTSLSSVLLHLNFLLANGIWVLPVFLESYNLGRQNWHENGYPFIKKASSFSSPSISTTSHNNAYDYIIVGGGTAGCPLAATLSQNFSVLLLERGGVPFTNPNVSFLANFHITLADTSPTSASQYFISTDGVFNARARVLGGGTSINAGFYTRASSRFIQKVGWDAELVNKSYPWVEKQIVHRPNFSGYQRAVRDSLLDSGVSPFNGFTYDHIYGTKVGGTIFDRFGRRHTAAELLASGNPDKLTVLVHATVQKIVFDTRGKRPKAVGVIFQDENGKQHEALLGNDRQSEVIVSSGAIGTPQLLMLSGIGPKAELQNLNISVVLDNPFVGKGMVDNPMNTIFVPSNRPVYQSLIETVGITKLGVYIEASSGFSQSNNSIHCHHGILSAEIGQLSTIPPKQRSIEAVKAFVKNKRDIPVEAFRGGFILSKVSNPWSAGDLKLINTNVEDNPAVTFNYFSNPNDLQRCVEGIQLATKVVQSEHFTNYTMCNRKTTEKLLNLTLKANVNLIPKHGNDTKSLEQFCRDTVITIWHYHGGCHVGKVVSPDYKVLGVDRLRVVDGSTFPESPGTNPQATVMMMGRYMGVKILRDRLGKLAGI. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11773 600 Pfam GMC oxidoreductase 437 583 IPR007867 GO:0016614
Seca4g11773 600 Pfam GMC oxidoreductase 69 341 IPR000172 GO:0016614|GO:0050660
Seca4g11773 600 PIRSF Alcohol_oxidase 49 599 IPR012132 GO:0050660
Seca4g11773 600 SUPERFAMILY FAD-linked reductases, C-terminal domain 337 539 - -
Seca4g11773 600 PANTHER OSJNBA0019K04.7 PROTEIN 34 594 - -
Seca4g11773 600 Gene3D - 186 532 - -
Seca4g11773 600 ProSitePatterns GMC oxidoreductases signature 2. 300 314 IPR000172 GO:0016614|GO:0050660
Seca4g11773 600 SUPERFAMILY FAD/NAD(P)-binding domain 65 593 IPR036188 -
Seca4g11773 600 Gene3D - 69 582 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11773 Seca-Chr4 258093339 258100569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11773 69 593 Miscellaneous Gene Families AT5G51950 54.237 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11773 K15403 - gmx:100788704 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11773 4 258093339 258100569 Seca4g11773 4 258093339 258100569 ECH
Seca4g11773 4 258093339 258100569 Seca4g08799 4 209706381 209718102 PCT