Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11449 ATGATGGAATGGTCTTCAAAATCTGCTGCAAGGGCTTACCTTGATACCCTTCAACTGTGTAACGATCATAAAAGACAATATGGCACTTGGAGAGTGCAAGAGCCAGGAAGGAATGAATTTGTATCAGCATTAGCAGCAGGAGTGAAAGCAAAACTTATAGTGGAAGTGACATCTCATGTATCTCCATCAACAATAGCCCTTGCAGCTGCTGCACGACAAAGTGGAGGCAGGCTTGTGTGTATTCTCCCTGAGTCAGTTCTTGAAGAGTCAAAAGAGGTTATTAGGGACTCAGGCCTTATAGACCAAGTAGAATTTAGAACTGAAGACCCCTCCAAGCTACTTCCCTACTATGAAAACATTGACTTCTTTCTTGTTGATTGCAAGGATCAAAACTATACAAGGTTGCTCAACTTGCTATCTGTTAACCCCACAAGATCTATAGTGGTGGCAAACAATCTGCTTGGTGATAAAAAAGGACTAGTAAGCTATCTAAGGGGAAAAGATGAGAAATTAGCAGTAAGGTCTCTAAGGCATCCTTTAGGAAAAGGCATGGAAGTTACTAGGATTAGCAAGAAGGATGACATTGATAATAGACTTGGGGTTAGAGAAGAAAATAGCAGGAAAAGGAAAAAGAGCTCATGGGTTGTCAAATTTGATGAGGAAAGTGGTGAGGAACATATATTCAGGGTACCTCAGATATGGCCATCTTTTGTCCGGCTGTGTATTCTGAATCTTGTCTTGGATTTCAAAATCATAGCATTGGCGGATGACAGTGGAAGTAGTGGCTTTGCAGCAGAAAATAGTTGCAAGAACACAAATTATCAGAATTTCCTCCCTCCACCATACCAGAATATATCCCATATGATATGCACACCTGTATGGCATACTTATGAATTGAGGATTAATAAACATGGTCATGCAAAAATCAATCAATTTTACCTACGGGGTAAGAAGCCATCAGAAGTCATAGTAGACAAAGGTGAACTACCGCTCAATAATGTTCCTGCGGCTGTGGCAACTAATGGTGCTGAAATTCATTTGGCATTTCAGTTGCAGATGACAACCCCATTTGAGAAACAACCAATTTTATTGGCTTTTGGTTCAAAAGGTCCTGCATACCATGAGTTGATTCAGATGAGGAAGAACCATGGAATAGTGGGTATAATAGGATGGGGTCTAATCCTGCCTGTGGGGGGAATTGTTGCTAGATACTTCAGGCATAAGAATCCCTATTGGTTCTATCTCCATGCAGTCATTCAATTTGTGGGATTCATATTTGGGCTTGTTACGGTCCTACTAGGATTACAACTCTACTCTAAAATGCATGCCCATATACCAGCTCACAGAGGCATAGGCATCTTTGCCCTTGTACTGTCTTCTTCAGCCATTAACATAGTGTTGGGGATGCAAGCTGCGGGGGCAGGAAGTGATTGGAAGATGGGCTACGGAATTCTTGTTAGTATAATCGTTGTTGCAGCTATTGTTCTGGAAGTATTGGCTTATTTGAGAAGATCCGAGATGCGTTCTCTGCCTCCTAACTTCCATATGAATCCTGTTAAAGAAGCTACATTTCCAAGTAATCAAGTTAGAAGTATGTTCTATCTTTATTCTTTCCTCGTTTTACTTAAACCTTATTTGTTTACTGAAATTGCTGCTGAAGAAGAAAACATGTTAGTTCTATCTACAAACTATCTTATACCACTTCGATGA 1710 0.4047 MMEWSSKSAARAYLDTLQLCNDHKRQYGTWRVQEPGRNEFVSALAAGVKAKLIVEVTSHVSPSTIALAAAARQSGGRLVCILPESVLEESKEVIRDSGLIDQVEFRTEDPSKLLPYYENIDFFLVDCKDQNYTRLLNLLSVNPTRSIVVANNLLGDKKGLVSYLRGKDEKLAVRSLRHPLGKGMEVTRISKKDDIDNRLGVREENSRKRKKSSWVVKFDEESGEEHIFRVPQIWPSFVRLCILNLVLDFKIIALADDSGSSGFAAENSCKNTNYQNFLPPPYQNISHMICTPVWHTYELRINKHGHAKINQFYLRGKKPSEVIVDKGELPLNNVPAAVATNGAEIHLAFQLQMTTPFEKQPILLAFGSKGPAYHELIQMRKNHGIVGIIGWGLILPVGGIVARYFRHKNPYWFYLHAVIQFVGFIFGLVTVLLGLQLYSKMHAHIPAHRGIGIFALVLSSSAINIVLGMQAAGAGSDWKMGYGILVSIIVVAAIVLEVLAYLRRSEMRSLPPNFHMNPVKEATFPSNQVRSMFYLYSFLVLLKPYLFTEIAAEEENMLVLSTNYLIPLR. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11449 569 SMART 561_7 382 498 IPR006593 -
Seca4g11449 569 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 29 139 IPR029063 -
Seca4g11449 569 Gene3D - 362 445 - -
Seca4g11449 569 Pfam Protein of unknown function (DUF1442) 4 229 IPR009902 -
Seca4g11449 569 Gene3D Vaccinia Virus protein VP39 5 205 IPR029063 -
Seca4g11449 569 ProSiteProfiles Cytochrome b561 domain profile. 345 550 IPR006593 -
Seca4g11449 569 PANTHER PUTATIVE (AFU_ORTHOLOGUE AFUA_6G01830)-RELATED 2 193 - -
Seca4g11449 569 CDD Cyt_b561_FRRS1_like 374 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11449 Seca-Chr4 253631669 253636637 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11449 - - gmx:100807608 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11449 4 253631669 253636637 Seca4g11449 4 253631669 253636637 ECH
Seca2g05572 2 142034277 142039174 Seca4g11449 4 253631669 253636637 PCT