Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11342 ATGATCAAAAGGGTTTTGGGTTCTGATTCTTTTTCATCTGTGGTTCTTCTAACAAAAGCCAAACATTTGAAAACCATGAAGAACAATCCCAAAGACCCAGATCATCTTTACTCTTCATGGAGCTTTTCAAAGCTAATGGCTTTCTTCTTCCTCTTAATCTCCATCTCTTACCTCTTCTATTCCCTCAGATTCGTTAGCCATTCCTATGATTGTGATCAAAACCCCAACATTCCCATTATCCATAGCAGTAGCACTTTCCCTGAAGAAGAATCCCCAACCCCAAAACCCTTTGAAGAAACCAACATTTCCCACATAGTCTTTGGCATAGGTGCCTCAGCTAAGCTATGGAAGCAGAGGAAAGAGTACATCAAGCTTTGGTGGAGGCCTAATCAAATGCGTGGCATAGTGTGGTTGGAACAAAAGGTGAAAACTGAGCCTGGGGATGAGAACCTCTTGCCCCCATTGAGGATCTCACAAGACACATCAAAGTTCAAGTACAAGAACCCAAAGGGGCATAGGTCTGCCATCAGGATCTCAAGGATAGTGTCAGAAACATTGAGGCTTGGGATGGAGGGTGTGAGGTGGTTTGTGATGGGGGATGATGACACAGTTTTTATCACTGAAAATTTGGTCAAGGTTTTGCAGAAATATGATCACAATCAGTTCTATTACATAGGGAGCTCTTCAGAAAGCCATTTACAGAACATTTATTTTTCTTACAATATGGCTTATGGGGGTGGTGGATTTGCTATTAGTTATCCATTGGCTGTGGCATTGGAGAAAATGCAAGATAGGTGCATCCAAAGGTACCCTGGATTGTATGGCTCAGATGATAGGATTCAAGCTTGTATGGCAGAGCTTGGAGTTCCACTTACCAAGGAGAAAGGGTTTCATCAGTTTGATGTGTACGGCAATCTATTTGGGCTTCTATCAGCCCATCCGGTTACACCACTGGTGTCTCTCCATCACTTGGACGTTGTGGAGCCCATATTTCCAAATGTGAGCCGTGTCCGGGCCCTAAAGCGCCTCACTGGGCCCATGAAGCTGGACCCGGCCGGGCTCATGCAACAATCCATTTGCTATGACAAAACCCGGACGTGGACCATATCCGTTTCTTGGGGCTATGCGGTTCAAATATTCCGGGGCATTTTCTCCGCCCGGGAAATGGAGATGCCGGCGAGAACCTTCTTGAACTGGTACAAGCGAGCCGATTACACCGCCTATCCCTTCAACACGCGCCCTGTCAGCCGAAACGTTTGTCAGAAACCGTTCGTTTATTACTTGACTAATGCAATCTATAAGGAAGATAGTGATGAGACTACAACTCAGTATGTTAGGGTTCAGCAGAACCCGGAGTGCAAGTGGAAAATGGAGGATCCGGCCCAAATCAAAATGGTTGAGGTTTATAAGAGACCCGACCCGCATTTATGGGACAAGTCTCCAAGGAGGAATTGTTGCAGGGTTCAGCGTACAAAGAAGAAAGGAACTCTAGTGATTGATGTTGGGGAATGCGGGGAAGACGAAATTGTTGAATTGTAG 1539 0.4548 MIKRVLGSDSFSSVVLLTKAKHLKTMKNNPKDPDHLYSSWSFSKLMAFFFLLISISYLFYSLRFVSHSYDCDQNPNIPIIHSSSTFPEEESPTPKPFEETNISHIVFGIGASAKLWKQRKEYIKLWWRPNQMRGIVWLEQKVKTEPGDENLLPPLRISQDTSKFKYKNPKGHRSAIRISRIVSETLRLGMEGVRWFVMGDDDTVFITENLVKVLQKYDHNQFYYIGSSSESHLQNIYFSYNMAYGGGGFAISYPLAVALEKMQDRCIQRYPGLYGSDDRIQACMAELGVPLTKEKGFHQFDVYGNLFGLLSAHPVTPLVSLHHLDVVEPIFPNVSRVRALKRLTGPMKLDPAGLMQQSICYDKTRTWTISVSWGYAVQIFRGIFSAREMEMPARTFLNWYKRADYTAYPFNTRPVSRNVCQKPFVYYLTNAIYKEDSDETTTQYVRVQQNPECKWKMEDPAQIKMVEVYKRPDPHLWDKSPRRNCCRVQRTKKKGTLVIDVGECGEDEIVEL. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11342 512 Gene3D - 91 343 - -
Seca4g11342 512 PANTHER FRINGE-RELATED 43 509 - -
Seca4g11342 512 FunFam Fringe-related protein-like 93 348 - -
Seca4g11342 512 Pfam Protein of unknown function, DUF604 234 486 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11342 Seca-Chr4 252009034 252013665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11342 28 506 Glycosyltransferase AT5G41460 63.883 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11342 - - gmx:100789583 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11342 4 252009034 252013665 Seca2g00943 2 15194464 15200773 PCT