Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11340 ATGGCTGAAAAAATGGTGAAAAGGTCACCTACTCAAGAAAAATATGGCATGGTTCAATGTGCAATAAGGTTACTGGTGGTGTTAGTGTTTCTGGGTTGGATTTTCATTTGGATAATGACGCCCACAAATACTTTCAAACAAGTATGGCTGCCTAAAGTCCGAGCAAAGACGAGTTCCACCTATATTGGTGCACAAAGTGCATCAATCCTATTGTTCACTTCTCCAGTCTTGCTCATAGCCGCTTTGGGATGTGTCTATCTCCATATAGGCAAAAAAACAAATGAGTACTATATGATCAGGTGTAATGGTGGGCAGAAACATGTGTCAACCATATGGAAGCGTCCGGTGATTGTAAAAGGCCCTCTTGGCATTGTTTCTACTACAGAGCTAATGTTCTTGCTTATGTTCATTGCACTCCTTGTTTGGTCCTTTGCAATTTATTTACGCAACAGCTTTGCAAAAATCACCCCCAAATCATCAGCAAAAGATGGCGAGAAACTATGGGAAGCAAGACTAGATAGTTCAGCACTAAGGTTGGGTATGGTTGGGAATATATGCTTGTCATTCCTGTTTTTCCCTGTGGCTCGTGGATCATCCGTGCTGCCACTGCTTGGCCTCACCTCAGAGAGTTGCATCAAGTACCATATTTGGCTTGGTCACATTCTCATGACACTCTTCACCTCTCACGGCCTTTGTTACATCATCCTTTGGGCAGCTACCAATCAACTTTCTGAGATGCTGACATGGGACAAAGTTGATATATCAATTATAGCTGGAGAGCTATCTTTGCTTTCTGGTTTGTTCCTGTGGGTTACAACCATTCCCCGGATTAGGCGAAAAGTCTTTGAACTCTTCTTCTACACTCATTACCTCTACATCCTCTTCATAATCTTCTTCATCTTTCATGTTGGCTTCTCCTATGCCTGCATTATGCTCCCTGGTTTCTATCTCTTCTTGATTGATCGTTACCTAAGGTTTCTACAATCAAGGCGCCAAGTTCGTTTGGTTTCTGCTCGTGTTCTGCCATGTCAAGTTGTAGAACTCAACTTCTCTAAGGGTCATGGGTTAACTTATAATCCCACAAGTGTGATGTTCATAAATGTACCAAGCATATCCAAGTTGCAGTGGCATCCATTTACCATTACTTCTAATAGTAACTTGGAGCCAGAAAGGTTAAGTGTTGTCATTAAAAGTGAAGGAATTTGGTCTCAGAAACTGTACCAAATGCTTTCAACTCCTTCCTCAATAGATCGCCTTGGTGTATCTGTTGAAGGTCCTTATGGACCTGCTTCAACCAATTATCTAAGGCATGACACTCTTGTGATGGTGGGTGGAGGAAGTGGCATCACACCTTTTGTCTCCATCATTCGTGAGCTAATATATCTGAGCACTACATTCAAAATCAAAACCCCAAAAGTTGTCCTGATTTGTGCATTCAAGAACTCTTCATATCTGTCAATGCTAGATTTGATCCTTCCAATTTCTGGCACCCCATTTGACATTTCCAATCTACAGCTACAAATTGAGGTCTACATCACAAGAGACAATGAGCTTAAACCAGATAGCCTAAATCAGCCTCAAACCATATGGTTCAAGCCAAATCCAACTGATGCACCAGTACATGCTATATTGGGTCCAAACAGTTGGCTCTGGCTTGGTGCTATAATCTCATCTTCTTTCATCATTTTCCTTGTGTTAATTGGGATCATTAACCGTTACTACATTTTCCCTATTGATCATAACACGAACAAAATATTTTCATATCCTTTGAGGGCGTTCCTTAACATGCTAGTAATATGTGTGTCCATAGCCATTGTTGCTAGTGCAGCTGTTCTTTGGAACAAGAGACACAATGCTAAAGAAGCAAAACAGATTCAGAACTTGGAAGGGGCAACACCAACTGCGTCACCAAACTCAATGATTTACAATGCAGATAGAGAATTGGAAAGTCTTCCATACCAGTCCCTTGCTCAAACTACCAATGTGCATTATGGTGTAAGACCTGACATAAGAAGAATGCTATTTGATATCAAAGGGTCAAGTGTGGGAGTTCTTGTTTCAGGACCCAAAAAAATGAGGCAGGAGGTTGCAGCCATTTGCTCATCTGGTTTAGCTGAAAATCTGCATTTTGAGTCCATCAGTTTTAGCTGGTGA 2154 0.4132 MAEKMVKRSPTQEKYGMVQCAIRLLVVLVFLGWIFIWIMTPTNTFKQVWLPKVRAKTSSTYIGAQSASILLFTSPVLLIAALGCVYLHIGKKTNEYYMIRCNGGQKHVSTIWKRPVIVKGPLGIVSTTELMFLLMFIALLVWSFAIYLRNSFAKITPKSSAKDGEKLWEARLDSSALRLGMVGNICLSFLFFPVARGSSVLPLLGLTSESCIKYHIWLGHILMTLFTSHGLCYIILWAATNQLSEMLTWDKVDISIIAGELSLLSGLFLWVTTIPRIRRKVFELFFYTHYLYILFIIFFIFHVGFSYACIMLPGFYLFLIDRYLRFLQSRRQVRLVSARVLPCQVVELNFSKGHGLTYNPTSVMFINVPSISKLQWHPFTITSNSNLEPERLSVVIKSEGIWSQKLYQMLSTPSSIDRLGVSVEGPYGPASTNYLRHDTLVMVGGGSGITPFVSIIRELIYLSTTFKIKTPKVVLICAFKNSSYLSMLDLILPISGTPFDISNLQLQIEVYITRDNELKPDSLNQPQTIWFKPNPTDAPVHAILGPNSWLWLGAIISSSFIIFLVLIGIINRYYIFPIDHNTNKIFSYPLRAFLNMLVICVSIAIVASAAVLWNKRHNAKEAKQIQNLEGATPTASPNSMIYNADRELESLPYQSLAQTTNVHYGVRPDIRRMLFDIKGSSVGVLVSGPKKMRQEVAAICSSGLAENLHFESISFSW. 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11340 717 Pfam Ferric reductase like transmembrane component 179 299 IPR013130 -
Seca4g11340 717 CDD NOX_Duox_like_FAD_NADP 335 514 - -
Seca4g11340 717 FunFam Ferric reduction oxidase 3 426 543 - -
Seca4g11340 717 Pfam FAD-binding domain 332 431 IPR013112 GO:0016491
Seca4g11340 717 Gene3D - 421 542 IPR039261 -
Seca4g11340 717 SFLD Ferric reductase subgroup (FRE) 6 717 - -
Seca4g11340 717 SUPERFAMILY Riboflavin synthase domain-like 325 416 IPR017938 -
Seca4g11340 717 Pfam Ferric reductase NAD binding domain 437 701 IPR013121 GO:0016491
Seca4g11340 717 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 437 712 IPR039261 -
Seca4g11340 717 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 328 433 IPR017927 GO:0016491
Seca4g11340 717 PANTHER NADPH OXIDASE 24 715 - -
Seca4g11340 717 SFLD Ferric Reductase Domain 41 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11340 Seca-Chr4 251985276 251989516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11340 9 717 Miscellaneous Gene Families AT1G01580 58.403 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11340 K00521 - gmx:100790114 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11340 4 251985276 251989516 Seca4g11340 4 251985276 251989516 ECH
Seca4g11340 4 251985276 251989516 Seca2g00946 2 15240283 15245453 PCT