Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11319 ATGTACCTTGCTTTTTTCAATCTTCTTTTCATTCATGTGATGGCTCATGCAGGTCCTTATCAAGGAGGTGTGTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTACAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAGACCTGGAGCCCCATGTTTGATCTTGTCAACGTATTTGAGGTGTTTCTGCCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTGATGATGCGTGACCGAGCTACTTATGAACAAAGGGTTAAAGGTATTGATCCTTTCTATGTTTTCATTGAAGGTTTTAGTATTAGCTGGTGTGCACTTGACCCATGGCTAGTATCACAGGGTTGCTATGTTTTCTTTGAAGGTTTTCTTTTTTTCTTCCTAATTTGA 474 0.4008 MYLAFFNLLFIHVMAHAGPYQGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKGIDPFYVFIEGFSISWCALDPWLVSQGCYVFFEGFLFFFLI. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11319 157 FunFam ubiquitin-conjugating enzyme E2 H isoform X2 3 129 - -
Seca4g11319 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 16 112 - -
Seca4g11319 157 CDD UBCc 19 116 IPR000608 -
Seca4g11319 157 Pfam Ubiquitin-conjugating enzyme 15 116 IPR000608 -
Seca4g11319 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 49 65 IPR023313 -
Seca4g11319 157 Gene3D Ubiquitin Conjugating Enzyme 5 119 IPR016135 -
Seca4g11319 157 SMART ubc_7 2 129 - -
Seca4g11319 157 SUPERFAMILY UBC-like 15 116 IPR016135 -
Seca4g11319 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 124 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11319 Seca-Chr4 251720376 251723471 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11319 K10576 - gmx:100804969 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11319 4 251720376 251723471 Seca4g11319 4 251720376 251723471 ECH
Seca4g11319 4 251720376 251723471 Seca2g00962 2 15558069 15562536 PCT