Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11315 ATGGCTATGAGCGGTTTGATTTCCAACCGCAACTTCGGTTCCTTCGTTGCCTCAGGAAATTTGTATAGATCGGGAAAGGATCTATCACATCAAAGAGGGGGAATTTCTGTTTCTAGTGTATCTGTTACACAGTATGGTGGCTGGATTGCAAATGATTCTTTTTCAAGATGCCAGCATGCGATGCATTTGCAAACTAATTTCCCTCTGGAAGAAAGAGTTTCAAAACATACACGAGCATTTCACAGCAAAGGGGAGCATTGTTCTCCAGTATCCAGGCAATCCTGTCACTGCATGAACTTTAAACTAAGGGCCAGGAGAAGAAGTAATTCTTGCCTTTCTTCAACTCACTATATCAGTAGCAATGTTGAACAAAGGGAAGTATATAGACTAGGTTTGAGCAAAAGAAAGCATGAGCAACCTGAGGTTGGTAAAGCAAATAAGTTTCGTGTTTGTTACAAGTCTGAGGAGTATGGCATTGCAGACACAAAGATGGATCCCCTGCAATCAACTGAAGGGACGGGTGAAGCCATTCTCCTGGAAGGAAATCTGCAACAAGTATCTCCTTGGTGGCAGCAGTTTCCTAAGCGCTGGGTTATTGTACTGCTATGTTTTACAGCATTTTTGCTGTGTAACATGGATCGTGTAAATATGAGCATAGCCATACTTCCAATGTCACAAGAGTTCAACTGGAACAGTGCAACAGTTGGCCTAATTCAATCATCTTTTTTCTGGGGTTATCTACTTACTCAGATCATTGGTGGCATATGGGCAGACAAACTTGGTGGGAAGCTAGTACTAGGTTTTGGAGTTGTTTGGTGGTCAATAGCAACAGTTTTAACTCCTATTGCTGCTAAACTTGGGCTTCCATGCCTGCTTCTTACGCGTGCCTTTATGGGGATTGGTGAGGGTGTTGCCATGCCTGCAATGAATAATATGCTGTCCAAGTGGATTCCAGTATCAGAGAGAAGCAGATCGCTTGCGCTAGTGTATAGCGGCATGTACCTTGGCTCTGTCACAGGCTTGGCAATCTCACCTGCGTTAATCCACAAGTTTGGGTGGCCATCAGTGTTTTACTCATTTGGATCCCTTGGAAGTATCTGGTTTGCCTTATGGTTAAGAAAAGCATACAGCTCACCAAAAGAAGATCCAGATCTCGGGGTGGAAGAGAAAAGGCTCATATTTGAAGGCAGTGTATCAAAAGAACCCGTGTCCGTTATTCCTTGGAAATTAATTTTATCGAAAGCACCTGTCTGGGCTTTAATAATCTCTCATTTCTGCCACAATTGGGGAACATTTATTCTATTAACCTGGATGCCGACATACTACAATCAGGTTCTGAAGTTCAATCTCACTGAATCTGGGCTCTTTTGTGTCCTGCCATGGTTAACCATGGCCGCTTTTGCAAATATAGGAGGCTGGATTGCTGACACACTGGTGAGCAAAGGCCTCTCCATAACAGCTGTTCGGAAGATCATGCAATCAATCGGGTTTCTGGGTCCTGCATTTTTTCTTACACAGCTAAGCCATGTCAAAACACCCGCCATGGCAGTACTGTGCATGGCTTGCAGTCAGGGATCTGATGCATTTTCACAATCTGGTCTATATTCCAATCACCAAGATATTGGACCACGCTATGCTGGAGTACTGTTGGGACTCTCAAATACGGCAGGAGTGCTTGCTGGTGTTTTTGGTACAGCTGCAACTGGATACATACTCCAACGAGGTTCTTGGAATGATGTATTTAAGGTTGCTGTTGCATTGTACATAATAGGCACATTGGTCTGGAATATCTTTTCAACTGGTGAGAAAATTCTTGACTGA 1821 0.4355 MAMSGLISNRNFGSFVASGNLYRSGKDLSHQRGGISVSSVSVTQYGGWIANDSFSRCQHAMHLQTNFPLEERVSKHTRAFHSKGEHCSPVSRQSCHCMNFKLRARRRSNSCLSSTHYISSNVEQREVYRLGLSKRKHEQPEVGKANKFRVCYKSEEYGIADTKMDPLQSTEGTGEAILLEGNLQQVSPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQIIGGIWADKLGGKLVLGFGVVWWSIATVLTPIAAKLGLPCLLLTRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAISPALIHKFGWPSVFYSFGSLGSIWFALWLRKAYSSPKEDPDLGVEEKRLIFEGSVSKEPVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAAFANIGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVAVALYIIGTLVWNIFSTGEKILD. 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11315 606 Gene3D MFS general substrate transporter like domains 194 383 IPR036259 -
Seca4g11315 606 PANTHER SOLUTE CARRIER FAMILY 17 189 603 - -
Seca4g11315 606 FunFam ascorbate transporter, chloroplastic isoform X2 194 383 - -
Seca4g11315 606 SUPERFAMILY MFS general substrate transporter 185 598 IPR036259 -
Seca4g11315 606 Gene3D MFS general substrate transporter like domains 404 604 IPR036259 -
Seca4g11315 606 ProSiteProfiles Major facilitator superfamily (MFS) profile. 199 603 IPR020846 GO:0022857
Seca4g11315 606 CDD MFS_SLC17A9_like 200 599 IPR044777 -
Seca4g11315 606 Pfam Major Facilitator Superfamily 203 564 IPR011701 GO:0022857|GO:0055085
Seca4g11315 606 FunFam ascorbate transporter, chloroplastic isoform X1 404 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11315 Seca-Chr4 251670739 251677244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11315 1 606 Organic Solute Cotransporters AT4G00370 70.957 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11315 K08193 - gmx:100793618 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11315 4 251670739 251677244 Seca4g11315 4 251670739 251677244 ECH
Seca4g11315 4 251670739 251677244 Seca2g00977 2 15692355 15698272 PCT