Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11312 ATGTCAGAAATTGACATGGCCGTTATCAAACCTGAGATGATGAAGCCTTATATCTGGCTTCAAACTTCCGACGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCTCTGATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGATTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGGAAGTCTTATGATGAGAGATTTGTTAGGATAGACACAGAGAGGCTGTGCGAGTTGACGTCTGCTGCGGACAGCCTTCAGTTAAAGCCGTTGGTTGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGAAAAACACCGGAGGAGATACGGGAGATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAGTTGGAGCCCTTGAGAAACATAACTGACGACCCAAGGATCAGGCTTTTGAACCGTTTATATGCCAAAAAGAGGAAAGAATTAAAAGAGCGTGAAAGGTTAAAGAGTGTTGAAGTTGAAAAAGATCATGTAGATGAACGTTCGGTTGACGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCAAAAGGGATTAAAACTTCCAAGAATAAAAAGAAAAACCGGAGGAAAAGAGAGCAACAGAAGAACTCTTCTTTGAAGGAAGCATCAGAACTGAATAAGGTTCTTGTGAGTATTGAGGTAAATGGTCATAATATCAGACATCAAAGTTCTGAAGCTGATAGAACTGGCGAGACCTCAAATTTACACCTTACAGAGGATGGCACTTTTACTCCTAAGGCTGAGTCTGATGATGGTGATATAGATGATGAGATTGATCCTGCATTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCTCGCAGATTAAATTCTGACTGGCCAGAGAGAATGCAAGAATTTTTATCACCAGGGCAAGAAAGGAAGACAATGTTTTTTACTACCCATGGGAATGGTTTTCTAAGGCGACATGCATGA 1062 0.4002 MSEIDMAVIKPEMMKPYIWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDERFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKERERLKSVEVEKDHVDERSVDDLLSFINGNDGDPKGIKTSKNKKKNRRKREQQKNSSLKEASELNKVLVSIEVNGHNIRHQSSEADRTGETSNLHLTEDGTFTPKAESDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQEFLSPGQERKTMFFTTHGNGFLRRHA. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11312 353 PANTHER SKP1 14 155 IPR016897 GO:0006511
Seca4g11312 353 SMART skp1_3 15 116 IPR001232 GO:0006511
Seca4g11312 353 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Seca4g11312 353 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Seca4g11312 353 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Seca4g11312 353 MobiDBLite consensus disorder prediction 259 296 - -
Seca4g11312 353 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Seca4g11312 353 MobiDBLite consensus disorder prediction 206 244 - -
Seca4g11312 353 SUPERFAMILY Skp1 dimerisation domain-like 90 158 IPR036296 GO:0006511
Seca4g11312 353 Coils Coil 223 243 - -
Seca4g11312 353 SUPERFAMILY POZ domain 16 80 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11312 Seca-Chr4 251640825 251651342 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11312 - - gmx:100794666 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11312 4 251640825 251651342 Seca4g11312 4 251640825 251651342 ECH
Seca2g00978 2 15711835 15716851 Seca4g11312 4 251640825 251651342 ECH
Seca4g11312 4 251640825 251651342 Seca2g00978 2 15711835 15716851 PCT