Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00978 ATGATGAAGCCCTATATCTGGCTTCAGACTTCAGATGGTTCAATCCAACAAGTAGAACAAGAAATTGCAATGTTTTGCCCTTTGATTTGTCAAGAAATTATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTTAGTCCTGCGATGTTGAGCTTGATTCTTGATTATTGCCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGGAAGTCTTATGATGAGAAATTCGTTAGGATGGACACAAAGAGGCTCTGTGAGTTGACATCAGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCTCGAATAATTGAAGGAAAGTCTCCAGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTTACAGAGGTGTCTGGTGCTTGTGAGAACTCTGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCCAAAAAGAGGAAAGAACTAAAAGAGCGTGAGAGGTTAAAGAATGTTGAAGTTGAAGAAGAGCATGTAGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCAAAGGGGATTAAAACTTCTAAGAACAAAAAAAAGAACAGAAGAAAAAAAGAGCAACAGAAGAGCTCTTCTTTGGAGGAAGCTTCTGAACTGAATAAGAAGCATGTAAATGGTCATGATATCAGACATCAATGTGCTGAAGCTGATAGAATTGCTCAGACCTCAAATTCACATACAGAAGATGACACTTTTGCTCATAAAGAAATCGATGATGGAGATATAGATGATGAGATTGATCCTGCACTAAAGGAAAAAATTGACAGGGAGGTGGAAGATTTTGCCCGGCGATTGAATTCTGACTGGCCAGAGAGAATGCAAGAATTTTTATCATCAGGGCAAGAAAGGAAGACAATGCTTTTCACTACCAATGGGAATGGGTTTCGGCGAAATACTTGA 1029 0.3984 MMKPYIWLQTSDGSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQRVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEVSGACENSEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDERSVDDLLSFINGNDGDPKGIKTSKNKKKNRRKKEQQKSSSLEEASELNKKHVNGHDIRHQCAEADRIAQTSNSHTEDDTFAHKEIDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQEFLSSGQERKTMLFTTNGNGFRRNT. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00978 342 PANTHER SKP1 2 148 IPR016897 GO:0006511
Seca2g00978 342 MobiDBLite consensus disorder prediction 320 342 - -
Seca2g00978 342 Gene3D Potassium Channel Kv1.1; Chain A 1 151 IPR011333 -
Seca2g00978 342 Coils Coil 166 186 - -
Seca2g00978 342 MobiDBLite consensus disorder prediction 230 249 - -
Seca2g00978 342 MobiDBLite consensus disorder prediction 265 286 - -
Seca2g00978 342 MobiDBLite consensus disorder prediction 322 342 - -
Seca2g00978 342 FunFam SKP1-like protein 21 isoform X1 1 158 - -
Seca2g00978 342 MobiDBLite consensus disorder prediction 265 282 - -
Seca2g00978 342 MobiDBLite consensus disorder prediction 202 249 - -
Seca2g00978 342 Pfam Skp1 family, tetramerisation domain 5 68 IPR016073 GO:0006511
Seca2g00978 342 Pfam Skp1 family, dimerisation domain 105 139 IPR016072 GO:0006511
Seca2g00978 342 SUPERFAMILY POZ domain 4 68 IPR011333 -
Seca2g00978 342 Coils Coil 219 245 - -
Seca2g00978 342 SMART skp1_3 3 104 IPR001232 GO:0006511
Seca2g00978 342 SUPERFAMILY Skp1 dimerisation domain-like 75 138 IPR036296 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00978 Seca-Chr2 15711835 15716851 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00978 - - gmx:100809439 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00978 2 15711835 15716851 Seca2g00978 2 15711835 15716851 ECH
Seca2g00978 2 15711835 15716851 Seca4g11312 4 251640825 251651342 ECH
Seca4g11312 4 251640825 251651342 Seca2g00978 2 15711835 15716851 PCT