Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11311 ATGGTTTCACTGGGAGCTATATATACTGTGGCCTATGTGTTCCTTTTTGCTTTCACTTTGGTTTTGGCTGGTGATATAGTTCACCATGATGATGTTGCCCCAAGAAGGCCTGGTTGTGAGAACAACTTTGTTCTGGTCAAAGTCCCCACTTGGATTGATGGTGTGGAAAACATGGAGTATGTTGGTGTTGGTGCAAGATTTGGCCCTACATTGGAATCAAAAGAAAAACGTGCCAATCATACTAGAGTTGTCATGGCTGATCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACCAGCGAGATCATTTTGGTGCACCGAGGAAAATGTAGTTTCACAACCAAGGCAAATATAGCTGATGAAGCTGGTGCTTCAGCCATCCTCATTATAAACTACCGTACAGAACTTTTCAAGATGGTTTGTGAAGAAAATGAAACTGATGTTGATATTGGAATACCTGCTGTCATGCTGCCACAAGATGCTGGAATAAACTTGGAAAGGCATATAAAAAACAACTCCATAGTGTCCATACAGTTATACTCTCCACTACGTCCATTGGTTGATGTTGCGGAAGTGTTTTTGTGGCTTATGGCTGTTGGTACCATTTTATGTGCTTCTTATTGGTCTGCCTGGACTGCCAGAGAAGCAGCTATTGAGCAAGAGAAGCTTTTAAAGGATGCTTCAGATGAATATGTTAATGCAGAAAATGTTGGTTCTAGTGGCTATGTGGAAATCAGCACTACAGCAGCAATTTTATTTGTTGTGCTTGCTTCTTGTTTCTTGGTTATGCTGTACAAATTAATGTCATTCTGGTTTGTTGAAGTTCTGGTGGTTCTATTTTGCATTGGTGGGGTGGAGGGACTGCAAACCTGTTTGGTGGCTCTGTTATCATGTTTCAGATGGTTTCAACATCCTGCACAAACATTTGTGAAGATACCCTTCTTTGGAGCTGTCTCATATCTGACACTTGCCATTACTCCCTTCTGCATAGTGTTTGCCGTGGTTTGGGCAGTTTATCGCCATGCATCATTTGCTTGGATTGGTCAAGATATTCTTGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAGGTTGGGACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTATGGGTGTTCGTCTCCAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTACTCAAGATACCACGCTTGTTTGATCCTTGGGGTGGTTACAGCATCATCGGTTTTGGGGACATAATCTTACCAGGACTTCTAGTAGCATTTTCACTAAGGTTGAATTGGAATTCAGATATTGATCATATCCCTCTCCTATTCAACTTCCTTGTGTTGCCAATGTTTTTTGTGATAAAATACAAGTCCATGTTATCTACTTGTAAAAATGTTTTAGGTAGATGGATAGAATGGTTGGTATCATGA 1494 0.411 MVSLGAIYTVAYVFLFAFTLVLAGDIVHHDDVAPRRPGCENNFVLVKVPTWIDGVENMEYVGVGARFGPTLESKEKRANHTRVVMADPPDCCSKPKNKLTSEIILVHRGKCSFTTKANIADEAGASAILIINYRTELFKMVCEENETDVDIGIPAVMLPQDAGINLERHIKNNSIVSIQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTAREAAIEQEKLLKDASDEYVNAENVGSSGYVEISTTAAILFVVLASCFLVMLYKLMSFWFVEVLVVLFCIGGVEGLQTCLVALLSCFRWFQHPAQTFVKIPFFGAVSYLTLAITPFCIVFAVVWAVYRHASFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDILWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLLVAFSLRLNWNSDIDHIPLLFNFLVLPMFFVIKYKSMLSTCKNVLGRWIEWLVS. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11311 497 Coils Coil 218 238 - -
Seca4g11311 497 Gene3D - 39 183 - -
Seca4g11311 497 FunFam Signal peptide peptidase-like 3 45 184 - -
Seca4g11311 497 SUPERFAMILY PA domain 99 136 IPR046450 -
Seca4g11311 497 PANTHER SIGNAL PEPTIDE PEPTIDASE 68 455 IPR007369 GO:0004190|GO:0016020
Seca4g11311 497 SMART psh_8 242 493 IPR006639 GO:0004190|GO:0016020
Seca4g11311 497 Pfam PA domain 89 165 IPR003137 -
Seca4g11311 497 Pfam Signal peptide peptidase 243 456 IPR007369 GO:0004190|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11311 Seca-Chr4 251632207 251640103 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11311 K09597 - gmx:100795197 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11311 4 251632207 251640103 Seca4g11311 4 251632207 251640103 ECH
Seca4g11311 4 251632207 251640103 Seca2g00979 2 15717335 15725582 PCT