Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00979 ATGTTACATCTTACATTCGACAAACACAAACCCAAAAAAATCAATAGAAAAGTAAAAACTCCTGTCTCTCTTTCTCTCTCTTCTCCACTCCTCTCTCTCTTTCTCTCTCTTCTCCACTCCTCTCTCTCTTTCTCTCTCTACACCCCAATTCCTCTTCTTCCTTTGTACCTTCCCTTCCTCCTTTTTCTTTCCAAAGATAAAATCTTTCCCTTTGATACCTCAACCCCTTTTGTTTTTCTCTCCTCAAATTTGCATCTAGAAAATCGGTTCTCAGTTCTCAGCAGCATGGTTTCACTTAGAGCTACCTCTGCTGTATGCTCTGCGTTCATGTTTCTTTTCACTTTGAGTTTGGCTGGAGACATAGTACACCCTGATAGTGTTGCTCCCAAGAGGCCTGGCTGTGACAACAACTTCGTTCTGGTTAAAGTCCCAACTTGGATTGATGGTGTGGAAAACTGTGAGTATGTTGGTGTAGGTGCAAGATTTGGCCCTACGCTGGAATCAAAAGAAAAACATGCTAACCATACTAGAGTTGCCATTGCGGACCCTCCGGATTGTTGTAGCAAGCCCAAGAATAAGCTCACCGGTGAGGTTATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTCATTATAAATTATCGTACAGAACTGTTCAAGATGGTTTGTGAAGAGAATGAAACTGATATTGATATTGGAATCCCTGCTGTCATGCTTCCACAAGATGCTGGTGAAAACATAGAAAATCATATACGAAACAACTCTGCAGTGTCTATACAGTTATACTCCCCACGGCGTCCGATGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCTTCTTATTGGTCTGCCTGGACTGCCAGAGAGGCTGTTATTGAGCGAGAGAAGCTATTAAAGGATGTTTCAGATGAATATCTAAATACAGAGAATGCTGGTTCCAGTGCTTATGTGGAAATCAGTACTGCAGCAGCAATTTCATTTGTTGTGATTGCTTCCTGTTTCTTGGTTATGCTTTACAAATTGATGGCATCCTGGTTTATTGAAGTTCTGGTGGTTCTATTTTGCATTGGTGGGGTCGAGGGACTGCAAACTTGCTTGGTGGCTCTGTTATCATGTTTCAGATGGTTTCAACATGCTGGACAAACATTTGTGAAGATACCCTTCTTTGGAGCTGTATCATATCTGACAATGGCTGTTACTCCCTTCTGCATAGTGTTTGCCGTGGTGTGGGGAGTTTATCGCCATGTATCATTTGCTTGGATTGGTCAAGATATTCTTGGTATAGCATTGATAATTACGGTTCTTCAGATTGTCCACATACCAAATCTCAAGGTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTTTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCTATGCTACTCAAGATACCACGATTGTTTGATCCTTGGGGTGGTTACAGTGTCATCGGTTTTGGAGACATAATCTTACCAGGGCTTATAGTAGCATTTTCACTAAGGTTGAATTGA 1644 0.4215 MLHLTFDKHKPKKINRKVKTPVSLSLSSPLLSLFLSLLHSSLSFSLYTPIPLLPLYLPFLLFLSKDKIFPFDTSTPFVFLSSNLHLENRFSVLSSMVSLRATSAVCSAFMFLFTLSLAGDIVHPDSVAPKRPGCDNNFVLVKVPTWIDGVENCEYVGVGARFGPTLESKEKHANHTRVAIADPPDCCSKPKNKLTGEVILVHRGQCSFTTKANIAEEAGASAILIINYRTELFKMVCEENETDIDIGIPAVMLPQDAGENIENHIRNNSAVSIQLYSPRRPMVDVAEVFLWLMAVGTILCASYWSAWTAREAVIEREKLLKDVSDEYLNTENAGSSAYVEISTAAAISFVVIASCFLVMLYKLMASWFIEVLVVLFCIGGVEGLQTCLVALLSCFRWFQHAGQTFVKIPFFGAVSYLTMAVTPFCIVFAVVWGVYRHVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRLN. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00979 547 PANTHER SIGNAL PEPTIDE PEPTIDASE 162 546 IPR007369 GO:0004190|GO:0016020
Seca2g00979 547 Pfam Signal peptide peptidase 337 546 IPR007369 GO:0004190|GO:0016020
Seca2g00979 547 Gene3D - 132 278 - -
Seca2g00979 547 SMART psh_8 337 547 IPR006639 GO:0004190|GO:0016020
Seca2g00979 547 FunFam Signal peptide peptidase-like 3 140 279 - -
Seca2g00979 547 Pfam PA domain 184 261 IPR003137 -
Seca2g00979 547 SUPERFAMILY PA domain 193 232 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00979 Seca-Chr2 15717335 15725582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00979 K09597 - gmx:100808921 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00979 2 15717335 15725582 Seca2g00979 2 15717335 15725582 ECH
Seca4g11311 4 251632207 251640103 Seca2g00979 2 15717335 15725582 PCT